RNA id: XM_043254354.1


Basic Information

Item Value
RNA id XM_043254354.1
length 867
RNA type mRNA
GC content 0.41
exon number 9
gene id st6galnac1.2
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8891105 ~ 8895681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGACTCTGATTATGTGTTCAGGCCCAATCAAGCGGTAAACATACAGCTTCTCAACCCGTTTTTATCTGTCAGGTTTTGCAGGTTTGAAGGCACTTTGCGAAATTCCTCTAATCCCAAATTTAAGGAGAAGTttattccaaacatccagctgTTTTTACGAAGCGATCGTCTCAGCATGAGTGAGTGGAAGCGACTTTATCACTTCAACAACCCTTTCGGCTACATGGGACAATATTACGCAGccACAAAAGCAGCTGTTGACAGCATCAACCTGTTTCTACAAGTACCCACAAGATCGAAGGACGTCTGTGATGTTGGGAAAAGGACGTGTGTTTATGTGCACACAGCACATCCCTCAATCCAGTCACTCATGGTTAATAAAAAGAGATTCCTGCTGACTAGGTGTgacATTAAATATGTTCATCCCGAGGGTCCAAGAGACTACAACTTTCTTGAGTCTCTTATGAAGAATAGAAAAACACCTTCAGGAGCATATCGTGGACGAAAgCCAAGCAATTAATACAGCGGCCATTTTAATGAAAGCTCTTACTACATCCTCCATCCAGACTTTCTCAGATATGTGAGTAACAGgtttcTTAGGGCAAaattattgaaaacaaaaagatggTGGCTGGTCAGGCCAACTAATGGAGCATTTACTCTTCTGCTGGCCATGCACACATGTTGTAAGGTGTATGCCTTTAGCGCTGATGATTATCGCAAACATTACAACTGCTACTATGACACCAAACGCACTAAACTAGTGTTTTATGCTAATTATGATTATCGTTTGGAGATGAGAACCAGGAAGAAATTTCATGATGACAAATGTATCTGGATGTATTTGGGAAAATTTGACACCTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128342 lncRNA upstream 15650 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 17560 8873327 ~ 8873545 (+) True G86756
TU128273 lncRNA upstream 204988 8682389 ~ 8686117 (+) True G86713
TU128123 lncRNA upstream 546137 8344669 ~ 8344968 (+) True G86593
TU128088 lncRNA upstream 599043 8291843 ~ 8292062 (+) True G86577
TU128592 lncRNA downstream 402589 9298270 ~ 9298849 (+) False pkd1b
TU128622 lncRNA downstream 585904 9481585 ~ 9485156 (+) False G86943
TU128623 lncRNA downstream 585904 9481585 ~ 9487179 (+) True G86943
TU128656 lncRNA downstream 700612 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA downstream 700612 9596293 ~ 9600682 (+) False G86959
XM_043253355.1 mRNA upstream 899 8884780 ~ 8890206 (+) True st6galnac1.1
XM_043253378.1 mRNA upstream 6471 8879370 ~ 8884634 (+) True LOC122355280
XM_043253330.1 mRNA upstream 21315 8863320 ~ 8869790 (+) True calcoco2
XM_043253368.1 mRNA upstream 28685 8856333 ~ 8862420 (+) True stx4
XM_043253328.1 mRNA upstream 34986 8843600 ~ 8856119 (+) True si:dkey-220f10.4
XM_043253305.1 mRNA downstream 536 8896217 ~ 8943033 (+) False caskin2
XM_043253302.1 mRNA downstream 539 8896220 ~ 8943033 (+) False caskin2
XM_043253300.1 mRNA downstream 540 8896221 ~ 8943033 (+) True caskin2
XM_043253299.1 mRNA downstream 540 8896221 ~ 8943033 (+) False caskin2
XM_043253301.1 mRNA downstream 540 8896221 ~ 8943033 (+) False caskin2
XR_006252198.1 other upstream 38656 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 185774 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1047022 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 1582876 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 1586257 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 861592 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 975983 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 1585934 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 1591939 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 1646548 10542229 ~ 10581755 (+) False svila

Expression Profile