RNA id: XM_043254357.1


Basic Information

Item Value
RNA id XM_043254357.1
length 4072
RNA type mRNA
GC content 0.50
exon number 27
gene id oplah
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5510698 ~ 5532907 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGGGAAGTGTATCGGAGGTGGTGCTGAATTTATACTCGCGTGGGATTGGTGAAGTGTCGTTTCACAACAGTAGTAGTAACTTGAACGGTTTTAGAGAAGAGTATCTGTTCATTTCTTGTTTTACTGCGTCTCGAGTCATGGCTGAAACTAAAGGGAAGTTTGATTTTGCGATTGATCGAGGAGGAACCTTCACAGATGTGTTCGCCCGTTTGCCTGATGGTAGAGAGAGAGTCCTAAAACTGCTGTCACATGACCCCCAGAACTACAGAGACGCCCCTACTGAAGGCATTCGCCGAGTGCTGGAGCAGGAGACTGGGCAGAGCTTTCCACGAGATCAGCCCTTGGACACTTCTCAGATTGGCTGGATACGAATGGGCACCACAGTGGCAACTAATGCCTTACTGGAGAGACAGGGTGAGAAAACAGCACTCCTGGTGACACGTGGATTTCGGGACTTGTTACATATTGGCACGCAAGCACGACCTAACCTGTTTGATCTGGAGGTGTGTATGCCGGAGGTTCTGTATGAGGAGGTGATTGAAGTGGAGGAGAGGGTTATTCTCAGACAAGATTCCTGTCAGCTACCCAGAAATGAGCCTAAACGAATAGTAACAGGCAGTACTGGAGAAAGTCTGGAGGTGTGGCAAGAGTTGGATCTTCAGCGTGTGGAGCAGGATTTGAGACGTGTGCAATCCAAAGGCATCAGAAGTCTAGCAGTGCTTTTACTCCATTCTTACACATGGGCTGCTCATGAGAAGGCTGTGGGCTCTTTGGCAAAGCGTCTTGGTTTCAGTCAAGTGTCTCTGTCCAGTGAGGTCATGCCCATGGTGCGAGCAGTGCCTCGTGGGTACACTGTTTGTGCCGATGCTTACCTCACACCAAAAATACACGTCTACCTCACTGAATTCTCTGCAGGCTTTAAAGGAGGCTTGAAGGGTGTGGATGTGTTATTCATGCAATCAGATGGTGGGCTGACACCAATGGAGCAGTTCTGTGGCTCTCGGGCAGTGCTTTCTGGTCCTGCTGGAGGAGTCGTGGGCTATGCTGTCACATGCTATGGGTTTATGGAAAAGAAGCCTGTCATTGGCTTTGACATGGGAGGCACATCTACAGATGTGAGCCGATATGCTGGACAGTATGAACACGTGTTTGAAGCAACTATCTCTGGCATCACCCTACAGGCTCCACAGCTTGATATCAGCACTGTAGCAGCAGGTGGAGGCTCTCGACTGTTCTTTCGGTCGGGGATGTTTGTTGTAGGGCCAGAGTCAGCTGGTGCTCATCCTGGACCCGCCTGCTATAGGAAGGGTGGTCCTCTGACAGTCACTGATGCTAATTTAGCCCTTGGCCGCCTGCTGCCTTCTTTCTTCCCAAAAATATTTGGTCCTGAAGAAAATGAGCCTCTCTCAACTGAAGAAACCATGAAGCATTTCCGTACTCTAACAAAAGAAATTAATCAGTACCTTTCAACTAACCAATCATCGAATAGGGCTGCAGGAGGGCACCATTCAGAAATGAGTATAGAAGATGTTGCCATGGGCTTCATCAATGTTGCTAATGAGGCCATGTGCCGGCCAATCCGAGCGCTTACACAGGCTAAAGGCCATGATACATCTGAGCATGTGCTAGCATGTTTTGGAGGAGCTGGTGGTCAGCATGCCTGTGCCATTGCAAGAGCCTTGGGCATGAAGACTGTCTTCATACACAAATACAGCGGAGTGCTGTCAGCATATGGTTTGGCTCTGGCTGATGTGGTGGAGGAGGTTCAGGAACCATGTTCTCTAAAGTATGAAGCAGGCTCATACTCTGAACTGGACCACAGGATAGAACAACTGTCTCAACGCTGCGATCAAATACTGTGCAAACGAGGCTTTGGCAGTTCTCAGATAAATATAGAAGTTTTCCTTCACCTGCGGTATGAGGGCACAGATTGTGCACTCATGATAACAGCCACAGGTCACCCCAGTAACGCCAACTCCTGTAAGTCTGGAGACTTCAGAACAGCCTTCACTAAACGGTATCTGAAAGAATTTGGCTTTACCATCACTGATCGGCCTATCATGGTAGATGATATCCGTGTACGTGGTTCTGGAAAGTCTGGAATTATGTCAAAAGTGCAGCCCAAAGCAGGGCAGAAATCTCCAAGACCTATTAAGATGACTCAGTGTTACTTTGAAGACCGCTATCTGGACACCAGCGTGTATCTATGGGAGGATCTTTCCTCTGATCACAGTATCCAGGGACCAGCCATCATTATTGATAAGAACAGtaCAATTCTTGTGGAGCCGGCGTGTGTGGCTCATCTGACAGAAGATGGTGACGTGTGTATTGATGTCAGCACGGGAACTCAGTGTGTGTTAGGAACTGAACTCAACGCCATCCAGTTGTCCATCTTCTCCCATCGCTTTATGAGCATTGCAGAGCAGATGGGTCGTGTGCTGCAGAGAACCTCCATCTCCACAAATATAAAAGAACGACTGGATTTCTCCTGTGCTGTGTTTGGTCCTGATGGAGGTTTGGTGTCCAACGCTCCTCACATCCCTGTTCATCTAGGAGCAATGCAGGAGACTGTGCAGTTCCAGATCAAGGCAGCAGGAGGCAGCATGCAGGAAGGAGATGTGATTCTAAGTAATCATCCGTGTGCAGGTGGCAGTCATCTACCAGACCTTACAGTCATCACTCCTGTGTTTCGTGATGGCATCCATGCGCCAGTGTTCTTTGTAGCCAGCAGGGGGCATCATGCTGATATAGGAGGGATCACTCCAGGCTCCATGCCCCCCCACTCAACCAGTCTGCAACAGGAGGGCGCCGTCTTCACTTCCTTCAAACTGGTCACGGGTGGAGTTTTTCAGGAGAAAGCTGTAACAGAAGCTCTCATGGCACCTGCTCAATACCCAGGATGCTCTGGAACACGCAATCTCCGTGACAATCTGTCAGACCTTCGTGCACAGgtagcagccaatcagagaggtTGTCAGCTAGTGGGTGAGTTGATTGCCAGCTACGGACTGGAAGTCGTCCAGGCGTACATGGCATACATCCAGAGTAACGCAGAGGTCGCGGTTCGAGACATGCTGAAAGATTTTGCTCGGCGGCGGCAACAGGAAACAGGCTCTCTTGAGGTTGAAGCAGAAGATCAAATGGATGACGGGAcactgatcagactgaaggtCCAGATCGATGAACAGCAAGGCAGTGCAGTGTTTGATTTCACCGGCACGGGTACAGAAGTGTGGGGTAACTGTAATGCTCCTCGTGCTATCACCCTCTCTGCCCTCATATACTGCCTGAGATGCATGGTGGGCCAGGACATCCCCCTCAACCAGggcTGTCTGGCCCCTGTTAAAGTCATCGTTCCCCCCGGCTCGATCCTGCAGCCATCTCAGAATGCTGCTGTAGTAGGCGGTAATGTGTTGACCTCACAGAGAGTGGTGGATGTCATCTTCAAAGCTTTCCAAGTGTGTGCGGCGTCACAGggttGCATGAACAACATTTCGTTCGGCAGTGAGAAAAGTGGTTACTATGAGACGGTTGCCGGGGGTGCAGGGGCCGGGCCAACCTGGAAGGGGCGCAGTGGAGTTCACACTCACATGACAAACACTCGCATCACTGACCCTGAGATCCTGGAGAGCAGGTATCCAGTGATTCTTGAGCAGTTTTCCCTGCGGCCTGTTTCTGGTGGAGCAGGTCTGTACCACGGTGGTGATGGTGTGATCCGGAAACTTCGGTTTCGTAGTCCAGTGGTTCTGTCAGTATTAACGGAGAGGCGTTCTACACAGCCCTATGGCCTACATGGAGGTAAAAATGGAGCACCGGGACTGAATTTGTTACATAAAACAGATGGCAGAGTTTTAAATTTAGGGGCCAAGAATACCATCAGCCTGGATCCTGGGGACATGTTCAGTCTTTTCACCCCTGGGGGAGGTGGATATGGAAGTTTGGATGAACAGGATGGAGACTTTGAGCTTCCTTCTAAACGTCGTTGCCTGTAGGAGCCAAAAGAACAAAGTACTggaaaaatagaaacaaaactTTCTAAAGACAGCTGAAATAAAGTCTAATGAAACAtc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01469 OPLAH, OXP1, oplAH; 5-oxoprolinase (ATP-hydrolysing)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126906 lncRNA upstream 14464 5495107 ~ 5496234 (+) True G85687
TU126904 lncRNA upstream 17764 5491714 ~ 5492934 (+) True G85685
TU126902 lncRNA upstream 24949 5483574 ~ 5485749 (+) True G85683
TU126891 lncRNA upstream 63979 5445407 ~ 5446719 (+) False drosha
TU126873 lncRNA upstream 107986 5397563 ~ 5402712 (+) True G85661
TU126935 lncRNA downstream 68567 5601474 ~ 5602181 (+) True G85713
TU126989 lncRNA downstream 279342 5812249 ~ 5816315 (+) False LOC122355829
TU127011 lncRNA downstream 288524 5821431 ~ 5821687 (+) True G85774
TU127179 lncRNA downstream 424987 5957894 ~ 5958234 (+) True G85905
TU127264 lncRNA downstream 565221 6098128 ~ 6098334 (+) True G85967
XM_043254437.1 mRNA upstream 34034 5452829 ~ 5476664 (+) True kcnh4b
XM_043254292.1 mRNA upstream 64011 5426581 ~ 5446687 (+) True drosha
XM_043254307.1 mRNA upstream 87281 5420706 ~ 5423417 (+) True psme2
XM_043254199.1 mRNA upstream 98260 5405555 ~ 5412438 (+) True irf9
XM_043253693.1 mRNA upstream 114186 5382602 ~ 5396512 (+) True atp2a1l
XM_043253874.1 mRNA downstream 10848 5543755 ~ 5564754 (+) True ppp1r16a
XM_043253921.1 mRNA downstream 81172 5614079 ~ 5621340 (+) True fkbp10b
XM_043254048.1 mRNA downstream 135993 5668900 ~ 5684328 (+) False si:ch211-217a12.1
XM_043254046.1 mRNA downstream 136001 5668908 ~ 5684328 (+) True si:ch211-217a12.1
XM_043254047.1 mRNA downstream 138444 5671351 ~ 5684328 (+) False si:ch211-217a12.1
TU126784 other upstream 421060 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1057423 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 1091485 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 1107018 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1233313 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 354045 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 354045 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 563041 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 682012 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 907914 6440821 ~ 6441526 (+) True G86019

Expression Profile