RNA id: XM_043254370.1


Basic Information

Item Value
RNA id XM_043254370.1
length 4155
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC122355817
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2398531 ~ 2402685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGGAGATCCTCAAGAAGCGGACGGTCAGATGAAATGGCACACAGAGGAAACATGAACACCTCGAGCATTTACAGCACATTCGGACGCTTCTTCCCTAATAACTTTTCTGTTTGGGAGCATCTCCAGAAGAACTGGACCACGCGCGACCTGACGCCTTTCTCCATCGACTTTCTGTTTGCGGGTCACGAACCAGACACTATAGTTTTAATGGTGATGTACGTGATCTCTTTCGTGACCGGACTGGTGGGGAACATCATGGCTCTGTGGGTCCTGACGCGCCGCAGGAATCGCTTGTCTGGAGCTTCAGCCACCAGGAGACTCCTGGTCAACCTGGCCGTGTGCGACATGATGGTGGTGTGCGTCTGCATGCCGGTCAACTTGGGACATCAGGTGTATAACGCCTGGGTGTTTGGAGACTTTCTGTGTCGAGCCGTGCCGTTCGTTCAGGCGGTGTCGGTCTCCGCGAGCGTTCTGAGTCTGGCCGTGATCAGTCTGAACAGATACTACAGCGTCCACAGTCCACTGCACGCCAGGTCTTTCTTCACGGCCAGAAGAATGATATGCATGATAGCCGTGGTTTGGGTCGTGTCTTCTGCGTTATGTTTGCCTTTATTCTTCATGAACACGACTAAGACTCTTTCCCTTCTGGACGGGCTGCACACCGTGACCGTGTGCGTGGAAAGCTGGTCTAAAGTCAAACTGCGCCAGGGTTACAACTTTTTACTCTTTTGCGCGTTGTATGGATTCCCGGTGGTCTTTAACCTGATCATTTGCTTCCTGACCGGTTGGAAACTGAGTAGAGGGGGCACGGCATCGATATCAGACCCCAACCAGCTCGCTCTGACCTCCTCTTCGACATCGCGCCTGAAAACGCGCAAGAGGATCGCCAAAATGGTCTTCGCGCTCGTGCTGCTCTTCACCTTCTCCTGGCTGCCGCTGTACGCCGTGGACATCTGGATCGATTCCAACATCCCCAGCTCCCCTGACAGAAACGACGAGCTGAGCAACGTCGAGCATAACTGGATTCTCCAGAGCAGACCCTTCGCGCAATGGCTGGGTCTCACCAACTCGTCCCTGAATCCCCTCTGCTACTGCTTTGTCGGAAACTTGTACAGATCGGCCAAAAGGTTCAGGGAAAGCTACAGAGAGAAAATGTCTTCGGTCTTGAGTCTGACCAATAAATCTTCAATTAGAAATTCCGCGACTAAAACCCAGCTGCGCAACTCTGGCTCGTCCAGGAGGTTCGCGTCGGAAACGAGGAGCTGCAACGGGTTCAAACTGACCAGAAGTAAAAGCGTGTCTTCGACGACCGTGTGTGAGAGCATTTGACTTGGGGAGCGCGAGAATGTACAGGCACAGATGGAAATATGAATTAAGGGTCAtgctttataaataactttCATTGAAAAGTCATTATCAAACGTCAGATGCTGCTTATAGAGTAGTAGTTCATGTACATTttagtcaatatatatattttaagggtttttttgCAACACAATAACACTGTGcttctatttattatttgctttttataattaaagacatttttcataaaaaaatatatatttccagCATAATTTAAATTTGAGTTTTTCAGGTGTGGGTAGTtgacgaataaaaaaaaagaccattttgTGTGACATAGGAAAAATTTAGaaacaaaaaacttaaattaacatgaaaaaattaGTTACAAATAGCTTAAGAGAGGTTTTgcattaacatatatatatatatatagtttttacatttttctgtcacacacTGATGAAGTCAACTACCCATGTCTCTTTTTTCCAGTGTTGTCTTAGACTCAGAAtgcataatgtaatattattaataatttaaggaTGTTTTCAAAAGTTATCAATCAAAGGTATTACTAagcattaatatgaattatatatttatctcggctatttagatttttttctttttttattagtttcagTTAAATAAGTGAATACCAGACTTGTTCTGAAATAAGTCCATATATGAGTGGAAAACTGTGGTCCGATTTACGGGGACAAAACCAGAGCGTGTGGCTCAAGTCAAGATTAATTGTACCATTGAGAGGCTTTAGCCCTGACGAGTGGTTGTCTGTTATTCCCACCATCTCCTCCCCGGCAGAAATCTCAAGAgctctaaataataaatattcctaCTGCTATACAAGACTGTATCACCGCACCGTGCATGTTTACAGTCTTTATTGAAACCGTTAAGTTATACAAATTTAACGACAAAttagagttatattaaaaaaacatactgctTATGTTCCAGTGTTTGCTGTCACACAAGAAAAAAACGACTCGGTAGgagattaatatatttatgcaagGTAATTTCCTTATTGTGCTAGCGTGACTATTACAGATGATAATTTGTTGTCACTTACATTGAGCACAGATGCGCACTCTCTCGGTGAATGCTAACCTGGCTGTGATTCTGTGCAGTAAAATTAATTTCGCATTAATCCGAACAAATGGCGTTCTAAGATTATCCTCAAGTGCAAAAGATTTTCAGCGATCTCTGCAAGCATGCTGGCTATATTTCAGAAACTATAATTATGCCGGTTTCGCTTCATTAACTGAAAATTGACTGTGCATAATTCGCTTAGTAATGAATCCAAGCAAGATACATCGGCGCAGAGATGCATTGCAGATGAGTGCTGATTATCGTAAATATGACATAAGCATCACCTCGGATGCTGATGCTTATTATAAATACCCAAATAAGCTGTGTAATGCTCTGCATTTGATTGAGATgcagtatttaattttaaattagcaGCGTTCACACCACTTAAGCTTGAAATATGCCCACATTGATAACGTAATAGATGTATATAACAGATCATGTAATAgaataacatatataaatgcttaACATTGAATTTGAATGAtgtatattcttatttttgatAAACCAGTTAAAATTTCGAAGCTCATCCGAAGCACAGTAAAAGTAGctctatttttgcaaatatattacagctttttttctctcactaGCGTACCGAAGAGCCCTAATGCATTACCATAATtgacatttttactgtttatagcAGGGAAAATTGAGTGACTAAGGCCtctattttgctttaaaagatCTCAAGAGTGTCCtctgattacatttatttaaactgaacGTCTAGCACGAATGGGGCTCCTGTCAGTCATTGAAAACAAATGAGCGCCATAATGGATGTAGTGCCTGTGCTAATAACCTCAGAGAGCTTGCGCCGTCAACAATTCAGTCTGgtttcaaaacaaaaggaaCGTCGGTGACAAACCGCGCCGCTCGGCGTGGCTTTAAAAGCGTAAATcgaacattaaaacaattaccGCGGCTTAATAACTCACACCTGATGGAGAGAATACACGCCACGGTACTGAATATTTTAGGCCGTCCGTGTTCATAGGCGGTCTCTGAATGAACTAAAATTTCCTGCAGTGACCGGAGTCGTTGTTATTCGGCGTGGGTGTTCATTGCTGCCACGTTCTGCTTTGTATTTTGAGGACGGAGGGGAAACCTGCGAGCGTGCTCAATAAATTATCGTTCGCTTTTTTCGTCAGACTTTGGCTGCAGTTACTCTTTCTCGCTCATCTGGACATCTAAAGCTATTCATCTGTAAAACAAGAAACGGGGCTTCTTACCTGGTATCTCTTCAGTCCAGCCGCTGAGTCTAATTGAATGTGTCGGTCCACACAGTGGGTTCTcttcaaagctttttttatatattcgaTCAGTTTAATTGTACGCCTAATGGAACTGAATGTAAGAAAGATTCTGTTTGAAGTCTTCAAACACGGCATAAAAGGCTTTTGAACTCTCCtttttctgtcattaataaACGCAGCAACTAGCTAAAGGGCAATATAGTGTACACCAAGGCTAAAGAAATCGTTCCCACAAAAATGAACATATGCTGGAAATGTATTTACCCAGCCAAGGCCATCCAAGATTAGCGTGTCTTCATCACAGCAGTAATCCATTTGACTCCAATGCATCAAGCGATATATATTGTGATGTGAAAAgctaaaaaacaaatccatcatcaGCTCTTTTGGACTGTTTATGCTTGTAAACAGCACTTATGCGTATTTCTCACCTGATGAGACTACTTTCTCAGTTCAGAAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126127 lncRNA downstream 87060 2311243 ~ 2311471 (-) True G85119
TU126123 lncRNA downstream 89498 2306892 ~ 2309033 (-) True G85116
TU126124 lncRNA downstream 89498 2306892 ~ 2309033 (-) False G85116
TU125963 lncRNA downstream 217612 2173988 ~ 2180919 (-) False jmjd1cb
TU125899 lncRNA downstream 396895 2001334 ~ 2001636 (-) True G84956
TU126187 lncRNA upstream 79562 2482247 ~ 2483927 (-) True G85173
TU126188 lncRNA upstream 82509 2485194 ~ 2486204 (-) True G85174
TU126193 lncRNA upstream 103493 2506178 ~ 2507961 (-) True G85177
TU126176 lncRNA upstream 170626 2573311 ~ 2576906 (-) True G85165
TU126235 lncRNA upstream 276037 2678722 ~ 2679291 (-) True G85214
XM_043253542.1 mRNA downstream 5631 2381934 ~ 2392900 (-) True adam8b
XM_043253536.1 mRNA downstream 18122 2338676 ~ 2380409 (-) False exoc6
XM_043253535.1 mRNA downstream 18123 2338676 ~ 2380408 (-) True exoc6
XM_043253539.1 mRNA downstream 18124 2338676 ~ 2380407 (-) False exoc6
XM_043253537.1 mRNA downstream 18125 2338676 ~ 2380406 (-) False exoc6
XM_043254337.1 mRNA upstream 67338 2470023 ~ 2473570 (-) True crym
XM_043254340.1 mRNA upstream 72311 2474996 ~ 2476396 (-) True snu13b
XM_043254444.1 mRNA upstream 178373 2581058 ~ 2585819 (-) True psmc5
XM_043254145.1 mRNA upstream 185059 2587744 ~ 2596891 (-) True smarcd2
XM_043254406.1 mRNA upstream 195211 2597896 ~ 2603692 (-) False atxn7l3b
TU125823 other downstream 451119 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1501501 891132 ~ 897030 (-) False dlx4b
XR_006252248.1 other downstream 2038219 340273 ~ 360312 (-) False prr12a
unassigned_transcript_1807 other upstream 91025 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 365223 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 688100 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 855846 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 895863 3298548 ~ 3299606 (-) False G85366

Expression Profile