RNA id: XM_043254373.1


Basic Information

Item Value
RNA id XM_043254373.1
length 9467
RNA type mRNA
GC content 0.51
exon number 16
gene id prr12a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 340273 ~ 360482 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACCAGACGACGCGTGAGCTcgagcatgagagagagagagacagaggggagGGAGAAGGGAGAGAAATAGCAGCCTTCAAAAATGGCGTCTTCGAGGgaaaatgactaatattttgaaaaagcgAGGCCTCGAGCTCGACGTTCCGGCGAACCGTCGCGTTTAAGACAGCGTTGGGTCGAAACGCGAGCCGAAGCGAGCGAAGGGAAAGGAGCGGGATTTGCCCGAAAACGCatcggcggcggcggcggcacCATCTTATTTTGATGCGTCGACACAGGGCTAGCCCGCGCTGCTAGCTCGCGACAACGCTGTGGGTGGAATTTAAATGTCGCGTTTGCCGTTCTCCGGATTCGTTCGCGATATCGTCGCGTGCCTAACGTAGCAGTCGTTTAACGGCCCTCGCTCGCTCGATGCATATTTCATACGAGTAAAGTAAGCGGAGAAAGGGGAGGAGAAACAAGGGAAAGGACGTATACGGTCATATGCGTCCGTCGGTAATTTATCGGTAACCAGGTCAAACCGAATTCTTCGCAGCCCGCCAGGAGCATGGCATTACTTGATCtggttttaaatgagaaaaggctgaaaaggaGGAAGAATGATTAAAAACTGACAACGGGGCCGCGATCGTGCTGTGCAGAAGAGAGTTTTGCGCCGAAACCGTTCGCTCGCACCGTCCAAGCCGCGCGTTATTGCGACGCGATGGACAGAAATTACCCTGGAGCTGGCTTCGGTGATTTGGGCGCAGGAGCCGGATGGAGCTACGAGAGATCAGCCAAAGCAAGCTTGGTGTACGGCAGCTCTAGATCATCACATCCAGAGTCTGAACTTCTTCATCGCCAAGCCTACGCCACTCCCCATCCCCTGCAGGGTTATGCTACCAATCACCATCCTGGTGGATCTGGCCAGGGTGGGGCTTGGGGTGCAGCTGGAAGGAGCCTGGGCCTGTCTGGACTTTTTGATGCTGGGCTGCACCATGCAAGTCCGTCAGGCCCAGATCCATCGGTTATGAACCTTATATCTGCACTAGAGTCCCGGGGTCCACAGCCACCTCCCTCTGCTTCATCTCTCCTATCTCAGTTTCGCACTCCATCATGGCAGACCGCCATGCACACGCCAGCCCCTGCAGAGCTATTCATCTCTGGCGCCCTTCCTGGATCTGGATCCTTCCCATCCTCTTCTGCTTTGTCTGCCTATCAGCACCCAGCGCCATTCTCTGGGCGGTCCTTTCCTGGTGTGACCCCCTCATTGTCCTTACAGGACACGCCCACTTTCAGCCCCACCTCAAATGGCCTCCTGTCACCCCATGATCCTTTACTCCACATCAAGACACCTTCTCAGTCAAGTCTGGGCTTTGACCGCCTGTTGTCATCACAGGGTGCAGCTGCAGCTTATCGCGGAAGTCATGATCCTACTGGGGCTGGAGTGACGTCTGCTCAAGCCTCCTCTGCAGCTTCAGTTTCTGCCCGCCATTTACCGTCTCATCAGTTCAACTTGTTGTCCTCCCAGCTTCAGGACCAGTCCTCCCAGTTGTACAGTGCCTCTGTATTTTCCTCAGCCCCTGCTACACCTCAGCCAACATCCCAAGAGCGGACAGTACCAAGACAAGACAGTGTAATTAAACACTACCAACGTCCCTCTCCAGCACAAGCCCCTTCATCCACTCCTCACCCGCTGCAGCACTATCTTAGCTGTGGGGTGTCAGGATATCAGCAAGCCACTCATACTCGCCATGCTGGTCTCTCTTGCAGTCCACTGGGTGAACACAGTCCTTCCTCAGACCATAAACCTTCCCCCAGGACTGAACAGTACAGACCGATAATCCAACCTTCTTATGGgtcctcatcatcctcatcctctgGAGGGGCTGGAAAAGGAACTAAGAGCAGCTCCAGTAGTGGATACTCCTCTTCTGGATCTGCGTCCTCTTCCAGAACCCCTCACACACCACCCTCTGCCTCTTCTGcttcatcctcatcttcatcctcttcctcctcctcagcgCCTGCTAGTGCTCGTCAGTCTAATTCCATTCCAACCTCCACTACTGCCTCTGCATCCTCACGACAACAACCACCAACCCAGACTGTACCCCCTCCACCACAGTCACATTCCCAGCCCCCTCAGAGCTCCTCTAACTCCACTCAGCAAACCCTTCCCAAGTCGTGCCTCTCGGGTTATGGATCCCCAGTGGCTCCAGTCAAGTCATCGAGTGGTCTAACTGGCCAGACCCCTCCTCAGCCACAACCCCAGTCTTTCTCTCCAAGTCAGCCTCCTCCATCACATCTTTCCCAGTCATATGGGGGATTCAGTTCTCCACAGACCCATGATCTTCCTTCAGCTAGGACCTCTGGAGTAGCTAAAGGGTATGGGAATTTGGGAAGTCAGTCATTTTCAGCGGAATCAGTATATGGAACTGATTCAGGTTATGGGTCTCTGCCACCATCCTTAGGAGGTGCTGGAAGTCCTTCAATGGGTTATGGTGCATCAGGACACTCACCTGCCCTTCTTAGGTCAGGAGCAAGTGGTGGAACAACTGGTGGTAGTAGTAGTGGAGGCAGTACAGGAACTGGAGGCAGTGGTAGCGTGGGAGGTGGAGGAGGTGCTGGAACTTACCACATCCCTGATTCAAGCCCATCTCCGTCTAGCAATTCTGGAATCATCCGCCCTGGTCTGCATTCTCCTGCACCTTCACGACCTGCTCAGTCACCTGTTGGAACAGGATCCAACAAATATCTATCTTCCGTTCTCTCACCTTCATTTCTGCCTTCTCCACAAGGGTACCCTGACACAAGAGGACCTCGATCACAACCCTACCACGCCTCTGGTCCTCCCAAAACAAAGTCAGATAACAGCATGCTTGGTGTAACAGAGTCTAGGTCACAACAGGATGATGATGTAGATGACGATTTCCTTATCCAACACCTTCTTCAAGCCCAGAGTCCTGCTCCTCAAACATCCCATCACCATGCTTCTCAAAGCCATCATTCCTCACAACCCACCCAGCAGCCTCCAGTACTTCCAGCCCAGGATGGAAATAAAGGGCTTGCTTATGAGATGAGCAAAAGCTCAGAAGAGAGGTATCACCTTCAGAGTGTTATTCGAACACATAGTGCCACCTCTAATGCTGCCGTCTCTGGCACAGGGAGTGGAGCTGGACTGGACAGTCAATTGGAGATGTCCCTAAAGAAACAGcaccaacaacaacagcatcaacagcaacaacatcagcagcagcagcagcagcaacaacagcagcagcataaACAACCACATCAACAACAACCACAGCAGAAGAGCAACAGAACTGTAAGTGATGGAGGACGAGGAAGTTCGGATCAAACACATTCCCATCCGCACCATCATCACGATTCTCTGGGATCAGTGGTGCATTATGGGCGGGGTGACCCATATTCACAACACTCCATTCCACAACACTCCACCTCTCACCATCAACACACTCCACATACACCAACCCACCCCCACCTACACTCCCACCCGCACATGGATCTTCAGAAAAAGCCTCAAGATTCAGGAGATATGACTTACATACGCAAGACACCAGATGTGCAGCAACATCACCATCAGCATCAGCAGGCACATCAACAGCAAACTCAGCATCATCAGTCGCATCCACagcaacatcaacaacaaccaCAACAGCAACAGCGTCACTCCCAGTCACAGTCGCTTATGGACTCTCCCACTGACCAGTCTCACCAATCCCCTCATTTGTTGCAGTCTGTGTTGTCCCACACCCGCAGCAAGATAGACCCTCAGCAACAGCAGCATTCTGTAAGCCAACAGGCTCTTATGGAAGCCACTGGGGGAGTTGTTTCAGCAGAGACCCATTCCCAGCCCCAGACATCCCAGCTCCAACTCCAGCTTCAGTCCCAGGCTATGGAAGCAGCTGCTCACTATGGTCATGGTACCCAGCAGCAAGACCAGAGCCGTCCTAAGTCTAACACAGTATCTTCACTAGACATGCTGGAGCATTCCCTCTCTCGGACATCTAGCCAAGAGGGCGCAATGGTGGATGAAAGGACAGGAGGTGAAGGAAGCAGGGGAAATTCTGGAACAGGAAGTGCAGGAAGTGTAGAAAGGCGTCAATCACAAGAGCAGCAAAGACTTTCATCTCACCATCCAACACAGCACCATGCCTCAGAGTTGCACTCATATCTTCCTGAACCAGACATGAGTTTATCGACAACTTCCCATGGACACCACCTTTCCCACCATCACCACCAACAGCAACAATCGTCACAAGGTCCTCAACATCCCAACTCCCACCATCAACACCCTCACCCTTCCCATCCTAATCAGCAGAGCCATCATCACCTTCCTTCACAGGCCTCCTCAGCAGCTTCTCAACAACAAGAGCAGTCTCACCCCTCTCAGATTCCACAACCTCAGCTTGAGCAGCATCAAGGAGAGCCCCAGTTTGACACCAGGAATTCAGcagtgaaatcaaatcaaaaccaaaatcaAAGCCAACATAGCCAGAGGTTTGTTCCTTTAACATCCATCTGCTTTCCTGATGCTCTTCTTCCAGATGAGGACCGTTCATTCTTTCCTGGAATGGAGGATATGTTCTGCCCAGAGGAGTACAAATCCACTTGCTCAGGAGGAACTGGGCAGGGACAAGATGGGGTTGCACCTGGCCAAGCAGTGCAGGAAGGAATGGAAGGAATTAAAACAACACCCGGAGGAGGAGACAATACAGGTCCAAGTTACGATATGCTTGGCCATCACAGCGACCAGGGGTACGGACAGTATTGCCATGATCTTTCAGAACCTGACAATGGAACCATGCATTTGGATCTTGACTCCTTAAAGACTCATGAGCTCCCATCTACAGTCAACACAGAGCAACTTGGACTGATCCAATCTCAACCAGCCGGCCTTGGAATGGGCACAACTGGAACTGTGGGGGAGGCATCTGGTGCCAAAATGGGAGGTACTGGGGGACCTGGTTCTGGATCTGGGGGTCTTACCTCTCCCATCTTCTGTTCCTCTCGCCCAAAGAAGCTGCTAAAGTCAAGTTCCTTCCATCTGCTTAAGGAAAGACCTGATCCAAACTCCTTGCCCAAGAAGAGCTATGCACAGGAGTATGAATTTGAAGATGATGAGGATAAGGCTGATGTCCCAGCTGACATTCGGCTCAACAGCCGAAGCCGACTTCCTGATCTGATACCAGACCTTGTGTCCAGTTGTCGCAAATCAAGTGGTGTGGGAGGGGGAACTTTAAGCCCTTTAATGGGTGATCTAGATTTTGGTTACCCATCTCTCGGTCCCCCTCCACAGTTGATGCCACAAGATGGACCGAAGAAAAGAGGCAGGAAGCCCACAAAGCCTAAAAGAGAAGGGCCTCCAAGGCCACGTGGACGACCACGTATACGCCCATTGCCGGAACCTCACCACTCTAGGGGTATGATGGGAGAATATGGAACAGCATATGTTCCTGAAAGAGGCAGAGGCAGAGGAAGAGGCAGAGGCAGAGGTAGACGGGATGAATCTATCATGGACATGGAGATGGCCAATAAAGACCAAAATCAGATGTATCAGCAACACATGCAGCAGCAAATGCATCACCAATCACAGCAGCAGCCACAGCATCAAGAGCCAATCAAGCCCATCAAGATTAAACTTCCTATTGGAACCATGTCATCTTCTGATGCCTTGTTGCGGACAGACTCTTTGTCAGGCACTGATCCGGCTCTCTCAGATGGTTCCCTTGGTTCAGCACCCTCTTTGGGATTGAGCCCTGGGACTCCGGGAGTGCCTGACATGAACAGACCTCAAGACAAGAAGTCTAAATCCCAAGAGttggAAGAGAAAGATTCAGAGAAGACTGGGTTCGTTGCCTCATTTCTAGATTTTCTTAAGTCTGGAAAAAGGCCATCAGGAATGTCAACGGGCTCAGCTGACAGCACTGGAAATGAAGATGGGTCTCCTGGGAAAAGTGGAGGCATTCGCCCATTATCCCCTCAACCGCCACCTCCCCCAGCTGCTGCAGCTGTGTCTGGATATGGAGATGGTGAAAGTGATGGAGGACTGTCTTTGGGTGGCTGTCCCAGCCCATGCAAGCGCTTGGATGAAGAGCTGAAAAGGAACCTTGAGACATTGCCTTCCTTCTCGTCCGATGAGGAGGACTCTGTCGGAAAGAACCAGGACCTGCAAAAGAGCATCTCCTCTGCAATCTCTGCTCTGTATGACACTCCTCAGCTCACCTCCTCAATGCAGCCTCCTTCACTTCCGCCACCCCCTCCTCCACCTCCGCCGGAACCACTGACACCAACACAGCAGCCACCAGCCCTCAGCCCTCAACCACCACTTCATACACACCCGTCCTCGCATGCCCCCACCCACTCTGTTGAGCCTGCAAGATTGCAAAGAGAAGAGCAAGAAGAAGAAATGGAAGAAAAAGTGAAGGATGTAGACGAGGTTGTAGAGCAAGACAAGGAAGAAAAGGAGAAAGCCTCAGAAACTGAGCTGCTGAGTGTCCCCAAAATTGGAGACTCACCCAAAGAAGCTATCGAAGCCCAAGCTCCCCCGTCTCTCCCACCAGTTTCCCCATCATCCCCTGCtccctcctccacctcctcgcCATCACCGCTTCCGCCCCTCCCcctttcctctcctctccctcaACAGGAGGACCTTCCTTCCCCCTCTCAGAAATCACCACCACAACAGTCCTCGTCTCCACCTAGTCCCGAAGCTTCCTCCATACCTGTCCTCTCTCCTCTACCTCCTCCTCCTGCAGAgcctcctctctcctccagccCACCTTCTCCCAGTCCACCTCCGGTACAGGAATCCATTGCAGAGCCTACCTCTCCTGAAGAGCCCCCTGCGCCTCAGATTTTACCGTTGCACTTAGCACAGAAACAGAGCGGCGCTGCCATTGTTGGCGAGACTGATGAGGATGAGAGCGAGAGTGGAGGCGAGGGCATTTTTAGGGAGAGGGATGAGTTTGTGGTACGGATTGAGGACATCAGGAGTCTGAAGTTGGCCCTGCAGACAGGAAGAGAGCCCCCTCCCATTTGGCGTGTACAGAAAGCTCTGCTGCAGAAGTTTTCCCCCGAGATTAAGGATGGACAGAGACAGTTTTGTGCCACTAGTAATTATCTGGGTTTTTTCGGGGATGCTAAAAAGCGCTACCAGCGGCTGTATGTGAAGTTTCtggaaaacataaacaaaaaagactATGTGAGGGTCTGTTCCCGTAAGCCCTGGCACAGACCTACTGTCAACCTAAGACAGTCTCAACCACTCCCGAAGTTAACGCCACCCCCCAACAACCAGACTCCCTTAGAGAGGAccgagaaagacagagagaagatTAAAGAGCCGCGGGAAAGCCGTGAGAAGAACAACATTCGGCCGAAGGAGCAGCGGGACAAAGAAAAAGTGCTTAAAACCAAGGAgaaggatgaaaagaaagaaaaagaaaagaagatttCACCTCCTCCTCCGCCACCTCAGAAGCCTGAGAAACGGGCAGCGGTGACAGAACGAGGGAAGGTGAAGGAGGAGAAGAGGGGCGGAGGACAGGAGAAGAAGACTGAGCGCTCTGCCAAACCTCAGCCGCCAAAGGTGAAGGCTGAACCTCCGCCCAAGAAACGCAGGATGTGGCTGAAGGAAGTACCTTCATCCTCAGACTCGGACTCTTCAGCAAGTGAGGATGAAATCTCCGTGAAAGCGGGCCTGAACACACGAGCAATGCGCGAGATGTACCGGAGCTACGTGGAGATGCTGGTCAGTACAGCTCTCGACCCGGATATGATTCAGGCTCTAGAGGACACCGAAGACGAGCTATATCTTCCTCCAATGCGCAAGATCGACAGCCTTCTGAGTGAGCAGAAGAGGAAGCTTTTGAAAAGAGTCAATATGAACTCTCAACACCAGGATGCTCTTCACACCTTCCCTCAGATAACGGCGGAGCCGCTGGACTCGGGGATGGTGAGGGTCAGACTGGGTGGTGAATGCTACAACCGGAAAACGCTGAACCGCATCAAAAAGAGTGTTTCCAAACCACAGGACCTCAAGTTGTCAACAGAAACATGTCGACTCTACAGTCTCTACCATTCGCTTCATCATTATAAATATCATACTTTCTTACACTGTAAGAAAGAGacgaacactaTAGAGCAGGCTTCAGAAGATCCCGGACAAGAGGAAGTTGTTCAGCAGTGCATGGCCAATCAGAGCTGGCTGGAGACGCTCTTCAACTCCTTCTTAGAGCTGATGACCCTCAGCACCAAAGCTTAAGGCAGAGAGGAAACAAGGAAAAGGAGAAACGTTGAGGAATCGGGGAGGCCTCGATGTACAGAGAAGCTGGATTTATTGTTGCCTAGCTCTCctgtcttcttcctcctcctcctcctcggttTTACACGAATCTTTCTTTTTAACGGCGACGGGAGAGGACAGCAACTTTATGAACTCCTTACAAATGCCCGCAAAAAGCGCAGGATCCCTCCTGAACGTTCAGGCAAAAGGATGCGACCAAACTGAGATCCGCTTTTACCGAATTTTCGCCCGAATCCGAAGGAAATGGTACACGGAGCTACGGCTGAAGGAATATATGGCGGCGTGGAGTCTTTGTGCTTTCGGGAATTACTGACACGAGGAGTTTCGCTTCGCCTCGACGCTAGGAGGAAGTCTGTTACCGAATTTTACACGAATAATTTTGTAAGACTATAGCAGTTTTATTCCAGCTTTTTTTCCGAAacgagagcgagaaagagagaatgacgGTTCTGTTTTATAAACGAGCGCAGATGGGGGAAAGCAGTCACGggatggtggtgatgatgatgatggtgatgatgatgatgatgatgatgcgcGCAACGACATGTGATGACATTCAACGCTTTAGTCTACACACGTGAAACAAGctaaagtaatacatttttattatttataaagacatttttaacaggAGCTCGCACATACAATACAAACCCGTGACGCTTCATATAAAACGGTTCAAATAATGTTCGTTCAGATGTTATAAATGGATCTTATTGCCACATTCTGAGCTGTCTTCCTTTTTCGCTCATCCAAGGTGGGTAGATACcgtggaaaaaatgtattatcctTTTTATCTGTtacagaagagaagagaaagacgGAGTGGAACAAATTATTCAAGCTACGCAAACGGTATTATCGCAGTGCATTCTACAGAGAAGATAAATGGCATCGAAAGCGAAGTGTCTGGTTCCCATTAGGGAGGGATTATGTATTAGtactatttaaaatggaaatttgtttttatttgtttgtcttttgtccGTATTCTGAGTATTATTTTGGAACAATCTAATACTGTGCTTCTTTCGAAAGTAAAGCCTTTGTGTAAATATTGTACAGCTCTTGACAAAAATCTCCCGGTTCTTCTGTACATGGACTATCCCTGTAtttgacaaacaaataaaaccatcGACAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252193.1 lncRNA downstream 141406 197400 ~ 198867 (-) True LOC122355220
XR_006252194.1 lncRNA downstream 142880 196901 ~ 197393 (-) True LOC122355221
TU125201 lncRNA downstream 168987 168124 ~ 171286 (-) False LOC122355191
TU125183 lncRNA downstream 199192 140100 ~ 141081 (-) True G84487
TU125191 lncRNA downstream 250699 88055 ~ 89574 (-) True G84492
XR_006252187.1 lncRNA upstream 22260 382572 ~ 385020 (-) True LOC122355197
TU125268 lncRNA upstream 22293 382605 ~ 385022 (-) False LOC122355197
XR_006252217.1 lncRNA upstream 25577 385889 ~ 386457 (-) True LOC122355423
TU125292 lncRNA upstream 117711 478023 ~ 478431 (-) True G84547
TU125294 lncRNA upstream 126369 486681 ~ 486965 (-) False LOC122355759
XM_043254233.1 mRNA downstream 1280 333577 ~ 338993 (-) True irf3
XM_043253531.1 mRNA downstream 21744 298608 ~ 318529 (-) True LOC122355359
XM_043253533.1 mRNA downstream 42159 292041 ~ 298114 (-) True LOC122355360
XM_043254211.1 mRNA upstream 3294 363606 ~ 381160 (-) False brsk1a
XM_043254216.1 mRNA upstream 3294 363606 ~ 381158 (-) False brsk1a
XM_043254209.1 mRNA upstream 3294 363606 ~ 381157 (-) True brsk1a
XM_043254210.1 mRNA upstream 3294 363606 ~ 381150 (-) False brsk1a
XM_043254212.1 mRNA upstream 3294 363606 ~ 381149 (-) False brsk1a
TU125247 other downstream 19013 319330 ~ 321260 (-) True G84521
TU125173 other downstream 217506 115719 ~ 122767 (-) False G84485
TU125181 other downstream 232623 78617 ~ 107650 (-) False G84486
TU125629 other upstream 530820 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1510461 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 2133398 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 2407596 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2730473 3090785 ~ 3092413 (-) False LOC122355711

Expression Profile