RNA id: XM_043254384.1


Basic Information

Item Value
RNA id XM_043254384.1
length 1763
RNA type mRNA
GC content 0.42
exon number 6
gene id pdap1a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8602210 ~ 8606138 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCCGCTTGACGTCACTCTCAGGAAGCGGCAAAATAGTGCTTTCAGCGTTGAGTCGGCGAGGTCGCGTCATATTTAACTTTCAAAGAGCTAATTTTAAGGCTCACAGAACACAATAAAGATATTCAGTGCTTCCGGGTATATTTAAATTAAGGaccaaacataatttttttcccccctgagGGTTTTCATCGTCAAAGAGTGTTTCAACAATGCCGAGAGGAGGCAAAAAGGGCCATAAGGGCCGTGGGAAGCAGTTCAGCAACCCCGAGGAGATTGATCGGCAGATGAGAGCTCAGAGGGAAATGGAAGCAAATGAGGGGGCTGAACGTGGAAGTTCATCAGAATCTGAAGAGGAGAGCAGCAGTGATGATGAACCAAAAAGGAAAGGTGTGGAAGGACTGATTGAAATTGAGAATCCCAACAGGGTCTCCCAAAAGAGTAAGAAGGTTGTAGAAATAGATGTCAATGAACCTAAAGAGCTCTCACGCCGGGAAAGGGAGGAGATCGAAAAGCAGAAAGCTAAAGAGCGATACATGAAGCTGCATCTAGAGGGGAAGACGGAGCAGGCCAGGGCAGACCTTGCCAGGCTGGCCATTATAAAAAAGCAGAGGGAGGAGGCagcaagaaagagagaagagctGAGGAAAGataaagaaGCAGAAGAGGCGAAGTCGAAACGCTAGTCCAAGCATCAGTACACAGGACGGGGCTTTTCTGGGGAGGGAGGGAAGGGGACTAGTTATTTAGAGGAGACAGCTCAGGGGAATCTATACATGTCATTCTTCCAGCCAGCCAAGGTTGGAGGATTTGGACATTTATAGGAAGTCAAATGGGAGGTGGTTTATGGTGTTGGAGTTTgttgggtttttatttttaataccacCAAACTTCACTCACCTTATCCCTCTCCTGACACATTCACTGTGCTCAGACTCTAAAGCTGCTGGAGTTTACTCTCAATTTCTACATTTCTATGTTATCACCATTACATTAGACTGGGATGTTATGGAAGAGTGAGGTAGGGTTGCAGGTGTGCTCACATGAGCTGACGGGGAAGAATGAAGCAGGTTGTAGAGTGGAAAACACTAACTAGACGTTTCGTCTTTTTATGTAAAGAACAACATCAGCCCTTCTACTGTACTGTTCTGTCAATCTTTGTGGCCTCATTCTGTTTAAGTGCAAAATGCATCTGTAGTCAAAGGTTAATAGAAGGTTATTTTGGTTGTTACCTCTTGAAATCAGGGCATGCTGGAACCTAATGCTGCAGgttacatcatttaaaatgttattgtttttaagtacttaaacacaatataatgcaatttcacagaaaaaggcATCACTATCATCAGGACTGTATTAAAGTAGCTGGTGGAGCTGTTGCATGTCTGCTGTCACCACATCATCTTCTATAATGCCCCTCTGCTCAGGGGTTTTCCATTTCTCTTGAGGTGGGACCATTGTTTCTGTCACTACCAGACTCACTGGTGTGTGTCTTCATAGTATTTTGAAGAGTTTTTATGCTTTAGCCCGTTACTGGTACCTGACTTGCCTTGACCATTTAAGGAAAGCAATATTACATAGATGATGCTTATGGTGCAACATTTTTTCCAGTTCTTAAACACAATTATTtacaaagtattttaacatttgtaaagCATTCACCAGTACTGAAGTAAGTATTTACGTGGGGTATTGATATAAAATCAGTGGAATTCCTTATTTCAAACttgtatacaaataaataaatagataaacgaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128385 lncRNA downstream 64004 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 88965 8511635 ~ 8513245 (-) True LOC122355061
TU128139 lncRNA downstream 257601 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 262395 8339456 ~ 8339815 (-) True G86606
TU128132 lncRNA downstream 263510 8334407 ~ 8338700 (-) False cpped1
TU128428 lncRNA upstream 17159 8623297 ~ 8626329 (-) True G86807
TU128431 lncRNA upstream 20956 8627094 ~ 8630207 (-) True G86809
TU128455 lncRNA upstream 69508 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA upstream 69508 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA upstream 73967 8680105 ~ 8744645 (-) True G86826
XM_043253682.1 mRNA downstream 1296 8591741 ~ 8600914 (-) True sh3bp1
XM_043253204.1 mRNA downstream 32136 8556275 ~ 8570074 (-) True tnrc6ba
XM_043253205.1 mRNA downstream 46559 8550384 ~ 8555651 (-) True csnk1e
XM_043253405.1 mRNA downstream 52377 8541219 ~ 8549833 (-) True tmem184ba
XM_043254453.1 mRNA upstream 499 8606637 ~ 8611224 (-) True slc16a8
XM_043254454.1 mRNA upstream 5111 8611249 ~ 8612461 (-) True cby1
XM_043254241.1 mRNA upstream 28754 8634892 ~ 8636912 (-) True LOC122355698
XM_043254240.1 mRNA upstream 31273 8637411 ~ 8638883 (-) True LOC122355697
XM_043254245.1 mRNA upstream 62258 8668396 ~ 8681985 (-) True kctd17
XR_006252259.1 other downstream 83101 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 83845 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 242230 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1213300 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1497992 7103880 ~ 7104218 (-) True G86108
TU128398 other upstream 4414 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 76914 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 81360 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 269479 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 875421 9481559 ~ 9489290 (-) False ormdl3

Expression Profile