RNA id: XM_043254386.1


Basic Information

Item Value
RNA id XM_043254386.1
length 3109
RNA type mRNA
GC content 0.41
exon number 8
gene id pkmyt1
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5748277 ~ 5762611 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCGCTCCGGAAGCATATGAACTCGTGTGGCGCGAGATATTACGAATAGTATGActcataataatattattcttgAGTAATTAGCAGAAAAGGATATCTGAATCACCAGAAGCTAAGCAAAATGTAGGTTAGTGCATATTGACATGGAGCATCAGtgaaactgatttatttaaattgaaatgtctTCTGAAAATTCATTGAGCCTGGGACAGTAGACTGTGCATTTCCTATGTCGGCTCCACATCAGACATCAGTAGCCAGCACCCCTCTCCCTCTTCCCACCCATTTCTCTCATGCCCAGCAGTCTTTTTCAATAAAGAAACGGAGACATCCCTTTTCTTCCTCATCatcttcctctctgtctcctccACGGCCATTATCTCATTCTTTACCACCACGGCCTCCATCTAAAGGATGTCCTCCACTCAGTCGAGTGTTCCACCACCGGCCTGCTCCATGGACACCCTTGTCACACTCACTTATAGCGTCGCCACCTCCTCGCTCTTTGTATGACCCATCCCATCCCCAGACCTTTTTCGACCAGTGCTTTTCCAATCTGGGTCTAATTGGCCGAGGCTCCTTTGGTGAAGTATTCAAGGTGGTGAGTCTTTTGGACGGCTGTCAGTATGCTGTGAAACGTTCAGTGCAGCGTTTCCGTGGTGAAGTTGAACGGGCACGAAGCATTGCTGAGGCTTGGAATCATGAGGGACTACACCCACACCCATACATACTGGGCTTTATTGCAGCTTGGGAGGAGGCTGGTCACCTCTACATCCAGACTGAACTCTGCTGTACCAGCCTACTGCTATATGCTGAGGAAACACCATTTCACACTGGTGAGACAACTGCCTGGACATACCTTTGTGACATGCTCTCAGCACTTCACCATTTGCACGCTCATGGGTTTGCCCACCTTGACATCAAGCcagcaaatattttcattacaaaGTCTGGACGGCTCAAACTTGGAGACTTTGGCTTGTTGATCAAGCTTCCTACAGACATCCGAAAAAAAGTgatagagggaaagagagaaatgaagaCAGAGGAGGTTGATTTACAGGAAGGAGACCCCAGATATATGGCTCCTGAACTCTTGAGAGGGGAGTATGGGACTGCCGCAGACATCTTTAGtttgGGTGTTTCTATCCTGGAGTTGGCCTGTAACATTGAGGTTCCTAAAGGAGGAGATGACTGGCAGCAGCTCAGAATGGGTCACTTACCAGCAGAATTCATTAATGCACTTTCAGAAGACATGCAGTATATACTACGACTGATGCTAAACCCCGAACCCTGTAAAAGAGCCACAGCACAGCAGTTGCTCTCTCTGCCCTCTGTGTGTAAACGCAAGTGGAGGCGACAGCTTTCCCTTTCCATTGTTGAAAGCTTTCTGTCTTTATTCCAATGGTGTCAGTCCCTTCTTACAGCCGGTTGGAAGTTCATATCTTCTCTCAATTTGCTGTTTACCTCGGTTTATGAGTCCGCATCATCCAGTACTCCTCCAAAAGAGAAATGTGAGAGAGATGCAGCCATGAGCAGCATTTACCCAGACTCAGAAAGCTCCTTTCCTGACTATGTGTTCCCTTCAGACAGTCCCGAACCTTCTCCTACCTTCTCCAACAGAGTCCAGGCACGCGTATGTGTAGGCAGTACTTCTACACCAATgcaaaatacacacatgcactccCTCTCCAGCATCCATTCCAGCAGCAGTTTGAGCCTGATTCATCACAGCTCCCAGCGCAGTATCACAGATTCACCCTGCAGCCGAGAGAGAAGCTGGATCACTGCTGAACTGTGTGACAAAAGTAACTTTGAGCCAAAGAACTTGCTTAGTCTCTTTGATGAGGCCACCACAGAAAGCAAGCCTTAAGTTGTGAATGCAACACACTTGATTTCAATTTTATCTGACTTCTGATTTGTAAGattactttcttttttgtgCAGAAACATTTAAAGGCATTTAAACCTGGTTTGAttataattgttgttttgttttttgtctggtgcaaatgtataataatttgcCAAGATACATAatatctttaaaagaaaaatatagccTGTGTAAATTGTGCGGAACTTTTGCAACAGATTTTATGGCATGTTGGCACTTTTGTCGGAATAAACCTGATTTGACAATGAATTAAAAAGGATGTTCAGAAAAAGCAACAATACACCACTCCTAAGTTACTCTTTgctataataatttgtattagcAATCATACAGGGTCATTTTAGGCACTGCAGAGCAACTCCACAACCAGAAGAATGCCTAAATCATTGGCCTCTTCAGTTCTAACAAACTCAACAATTTCTCTATGGCCTATTGTTTcagtgtcacttttgatcatccTAGAACAaagactttttgttttatagagatttttttaaaacttccaataaaatgcttacatttacacaatttaaaaaaaaacaaaacatgtttattaacCCTTGTAATATGTCTTTTTTAGCCACTGAAAATGGcagaattgtttattttacagattgAAGTTTGAATATCCTGTGAACAAAAGACATTGCTTGTTTGCAGATCAGggacaatatttttattaaagaaaacaccaccatattttccatatttcaAATAGGTTTAGATGAGTTGATGCATACCTGTCCCATCTAGTCCCGTTCTAGCGCACAGCGCCACTGTGTTAGCTTAGCTCTATTCATTCCTTCTGTACCAAACAGGCATGAATTTAGAAGCAACCAAACACTTGCATATTTTCCCTATTTTAAGACGATTACTTCAGTAGTTATACACGTATGGTGACTCAAAATAAATTGTGGCGATGGCGAAGGAATGAATGGCATAAGCTAAATGCTAACATAGAGCTAGAGCTATTCAGTGTACACACTAAGACGGAACAAATGTGTATCAACTCATCCTTTTGAGGGAAGAACATAGTAAAATGTGGAAAACCAGTTCAATCtgaatatgatttaatttaatattgcagtcctacttattttttatttatttttttggtaagGAATGTTTATTCCATGATCTATATTTGGTGATGTGATATAATGCTGGTGTAAAAGCCAATAAAGTTGCAAGTAAAGTGCATTGTTAAAtaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127129 lncRNA downstream 17187 5727304 ~ 5731090 (-) True G85868
TU127056 lncRNA downstream 321766 5423084 ~ 5426511 (-) False lsm5
TU127055 lncRNA downstream 322150 5423084 ~ 5426127 (-) False lsm5
TU126767 lncRNA downstream 1295001 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1334915 4412624 ~ 4413362 (-) False LOC122355055
TU127155 lncRNA upstream 48054 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 57746 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 74769 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 75956 5838559 ~ 5838957 (-) True G85893
TU127200 lncRNA upstream 194975 5957578 ~ 5957779 (-) True G85922
XM_043253671.1 mRNA downstream 1747 5736592 ~ 5746530 (-) True sult1st6
XM_043254045.1 mRNA downstream 14989 5703313 ~ 5733288 (-) True avl9
XM_043254041.1 mRNA downstream 57888 5685526 ~ 5690389 (-) True buc2l
XM_043253168.1 mRNA upstream 112482 5875085 ~ 5878221 (-) True mylpfb
XM_043253059.1 mRNA upstream 255388 6017991 ~ 6022156 (-) True neurod2
XM_043253681.1 mRNA upstream 288565 6051168 ~ 6078068 (-) True LOC122355418
XM_043253679.1 mRNA upstream 434879 6197482 ~ 6280348 (-) False LOC122355417
XM_043253675.1 mRNA upstream 434879 6197482 ~ 6280348 (-) False LOC122355417
TU127052 other downstream 321766 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 322150 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 351365 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 351365 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 351365 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 222386 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 228310 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 289120 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 301695 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 907716 6670319 ~ 6671247 (-) True G86049

Expression Profile