RNA id: XM_043254401.1


Basic Information

Item Value
RNA id XM_043254401.1
length 2861
RNA type mRNA
GC content 0.46
exon number 20
gene id mpp3b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7473723 ~ 7486698 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGAAGATTGTATGTGAGAGAGAACGAGGGAAGGGGGAGGACGTAAGGAAGAACTGAGATACACTGAGCCAGTGTAGCAGGAATCGCCACAGAGATGCCGAGGGTCTTTCCATGAAAGCGGAAACGCTCTCACGCACGCACGGGCGGTGAAAGGCTTTTCAGATGAGCCCACATTTTGAGTGACCTGAGAGTAGAAGAGAACCATTTTTTCTTCGTCTCTGTCCGTCTCATGAGCAGCAATGCCTGTTCTTTCACCTACCACAGgtTTGCACGAGATGCTAGCCCTCCTCACCTCCCAGCTGCATCCAGATGCTAATCACAAAGAGGACATGGTTTTCCTCAGGGAGGTCTTCAGTGAGAGGAGCCTTAGCTATCTCATGAAAATCCATGAGCGACTCAGACAGTTCCAGCTCCAGAGCCCAACCCCAGTGCTCAACAGCGCATCCTGCCTGGCAGAAGACGTCGCAGAGGAGCTACAGAATGGACCACTGGAAGAAGATGAAAGAGAGCTATTAACACTGCTTACCACTCCACATGTGAAGGCAGTGCTAACAGTACATGACACAGTGGCACAGAAGAACTTTGAGCCTGTGCTTCCCCCTCTCCCGGATGATATAGACGATGAACTGGAGGAAGAATCAGTAAAGATTGTgcgtttggtgaagaacaaggAGCCTCTTGGTGCGACCATCCGCAGGGATGAAGTAACTGGGGCAGTAGTGGTTGCTAGGATAATGAGGGGAGGAGCTGCAGACCGTAGTGGTCTGGTACATGTTGGAGATGAGTTACGGGAGGTCAATGGAAATCTCATTATACACAAACGTCCTGAGGAGATCAGCCAGATTCTGTCTCAGTCTCAGGGCTCGATCACTTTGAAGATAATTCCTGCCATTAAGGAAGAGGATCGGTTCAAGGAGAGTAAGGTCTATTTAAGAGCCCTTTTTGATTACACACCATTTGAAGACAAGGCCACACCTTGTCAGGAGGCAGGACTGCCTTTCACACGTGGAGACATCCTCCAGGTGGTTAGCCAAGATGACCCAACATGGTGGCAGGCCAAAAGAGTTGGAGACAGCAACTTACGTGCTGGCCTCATTCCTTCAAGACAGTTTCAGGAGAGACGACTGTTGTATAGGATGAAAATGGGAACACACCAGAGCCCTAAATCACCTAGAGCAACACCTTGTGACCAAACTTGTGAAAAAGAGGACTGTGACAGTGAGGGCAGTGTCGGTGGACAGCACGTAGTTTCTCCAAAGTGTAAGGCGGTGGCACCGTCCTGTGGCCAGGCCTTTTCCTGGGAGTTTTACTCAGCTGGTCTAAGGAGAAGCTTCAGACTGAGCCGCAAGGATCACCAGGGTTCAACCAAAGAGTCGCGTCCAGCAGAGTCTGAAGAGAATGAGTTCCTCATATATGAAGAGGTGACACTACATCAGATGAGGCTCCAAGAAAAACCAAGGCTTGTGGTGCTGATAGGATCTCTTGGTGCTCGGATCAATGAGCTAAAGCAGAAGGTTATTGCTGAGAATCCTCACCGCTATGGCGTCGCTGTGCCACacacaacaagacccagAAAGAGCCATGAGAAGGAAGGTGTGGAATACCACTTCATCTCCAAGCAGGCCTTTGAGGCTGACATCCAATCAAATAAATTTATTGAATATGGTGAATATAAGAATAATCAATATGGGACGAGTCTGGAGTCGATCCGGAGTGTCCTGGCGAGAAGTAAAGTCTGTCTGGTAGATGTTCAGCCTGagGCCCTAAAAATTCTCCGTAATGCAGAGTTTAAGCCATATGTGATTTTTGTAAAGCCACGCATCCCTGAGGTACGTCAGCAGCGCAGCTCTCCTACATCGCCAGGAAGGGGTGACAATGGACACATCACAGACGAAGACCTGCAGGACATGAGGCAGTCAGCCGAGCAGATGGACCAGCAATATGGCCACCTAGTGGACAGGGTCCTGGTAAAGGAGGACTCTGCCAGTGCCTGTGTAGAGCTGAGGAATATTCTGGAACGACTCGAGAGAGAGCCGCAGTGGGTGCCTGTCAGCTGGGTCCGATCTTGATCCTCCCTCCTTCCTTAAATTCAAACGCTCACATATGGTGTACTGAAAACATAGACCTCTCTGCCTCTTTCTGAGTCTGCCGTCTGCCAGTTTCTGTTTCATCCTGTTTGACTGAAGTAATGCAAAGCAAAATACAAGTGCCGTCTGAATCGTTGAAACTGAGATCTATTGTACTGCGCTAGTGGTGAAGATTTCTGTTCTTGAGATTTTGCATGGAAGTAGCATCGACAAGAAATGTATCACTAATAGCTGAAAGAATTTgtgttctgtggaaaaaaaaaggttatccTTAATTCTGTAGAGTGAGCTGcacaaataaacatcaaatgaaGACAGGACCACTTGAATGAGAGGACAACACTGACTCAGGTTTACTCACTGTGTCAAAGCTGGTTTCTGCCAGGCAAATAATCTAGTGTGaaagtcttttgttttgttatcttCAACTTATGCTGGCTGTGtatatttagttaaatgtaaatggaattatgtaaaatatcatactgtatatttgcaaactatttcagtgtttatacttgtgtaaaataaaatttcgtATTTGGTCACAGCCTGTCATAATTTAGTTGTAATTGTCAGCGTTTTTGTATCAAACCGATGATGTCTGTGTAGTTCGTTAGACAAATTCTATATGATTATAGTCAAAGAGCATAAAGCATGTTAACGTCTTTATGGCCATATAGTACTGTTCAAAATGTTATGAATGTGTGCCCTTTTAGAGTACATGGAgtatttttgaatgtaattgttataataaaaattacaaactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127574 lncRNA upstream 84742 7387668 ~ 7388981 (+) True G86202
XR_006252184.1 lncRNA upstream 154132 7317500 ~ 7319591 (+) True LOC122355189
TU127494 lncRNA upstream 168875 7303138 ~ 7304848 (+) False G86142
TU127593 lncRNA downstream 15880 7502578 ~ 7504499 (+) True G86219
TU127680 lncRNA downstream 214645 7701343 ~ 7701799 (+) True G86275
TU127689 lncRNA downstream 232286 7718984 ~ 7719283 (+) True G86283
TU127673 lncRNA downstream 233694 7720392 ~ 7723861 (+) True G86268
TU127670 lncRNA downstream 338574 7825272 ~ 7834145 (+) False LOC122355675
XM_043253219.1 mRNA upstream 1008 7403552 ~ 7472715 (+) True lrp2b
XM_043254374.1 mRNA upstream 87760 7378927 ~ 7385963 (+) True muc13b
XM_043254021.1 mRNA upstream 98918 7366334 ~ 7374805 (+) False znf281b
XM_043254020.1 mRNA upstream 98918 7366335 ~ 7374805 (+) True znf281b
XM_043253235.1 mRNA upstream 181583 7233943 ~ 7292140 (+) True svild
XM_043254149.1 mRNA downstream 1022 7487720 ~ 7492825 (+) False ppp1r3cb
XM_043254148.1 mRNA downstream 2431 7489129 ~ 7492825 (+) True ppp1r3cb
XM_043253176.1 mRNA downstream 62306 7549004 ~ 7552494 (+) True ankrd1b
XM_043253009.1 mRNA downstream 68315 7555013 ~ 7566171 (+) False kif20bb
XM_043253011.1 mRNA downstream 68315 7555013 ~ 7566171 (+) False kif20bb
TU127500 other upstream 165494 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 168875 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 951152 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1032197 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1257156 6214919 ~ 6216567 (+) True G85986
TU127672 other downstream 329125 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1218562 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1349750 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 2270575 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 2384966 9871664 ~ 9873895 (+) False LOC122355252