RNA id: XM_043254410.1


Basic Information

Item Value
RNA id XM_043254410.1
length 2373
RNA type mRNA
GC content 0.42
exon number 7
gene id atxn7l3b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2597896 ~ 2603692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGATTGCTCAGGTCTGGGTAAAGGGAAATGGAAGTCTGCAGACGGGGATAAGAGATTGAAATCCGAATGTGgaactttgtttttgtctgtgagGAAATACTTTTAGGGAAATGTCTCTTCGgaccttttgtgtgtgttacctTTCATGTGCAAACCGTTAACTGGACAAAGAACTCGTAGATTCCTATCAGATTTGTTTATTGATTTGATCAGATGAGCAGCTTCAGTCAGTGCAGTGAACAGACCGACAACAGCAACAGCCTCCATTCCAGAGCTGcCTCTCCTCAGCCCATGACTGCTGCACTACAGCATGTAGACAGCAGTGCTTTCTCCTGGAGcttttgcaaatgaaaatggAGGACGTGTCTCTGTCCAGTATGGACAACAGTAAGATGGAGGGCTTTGCTCAGGAGATCCTGTCTGACCTGGTGGAGGACGCCTGTTTGGGTCTTTGTTTCGAAGTTCACAGGGCTGTCAAACAGGGATACTTTTTCCTGGATGATACAGACCAGGAGAGTATGAAAGACTTCGAAATCGTGGACCAGCCTGGAGTAGACATTTTTGGGCAAGTGTACAACCAGTGGAAAAACAAAGAGTGCGTGTGTCCCAACTGCAGCCGGAGCATCGCTGCCTCAAGATTTGCTCCTCACCTGGAGAAATGCCTCGGCATGGGCCGCAACAGCAGTCGCATTGCCAACCGCAGaATTGCAAGCGGCAACAACACGAACAAATCGGAGAGCGATCAAGAGGACAACGATGATGTCAATGACAATGACTGGTCTTATGGGGCAGAAAAGAAAGAATCCAAATTCACCAAGAAGATCCAAATCtatgaaacataaaaatgACTGAACGGGAGAAACGAACCAGAGAAAATTTCCACATCAAAGAAGGCGGAGCCGCAGAGCGCACCTACTCATTATGTAATCGTCACGAACCAATGGTAGTTCGAAGGCGTTTACCAGCCAGAGCAAACTTTTCCAGAAAGTGGGCTTTTGCAAGTCAACTGATTTTGTTCGAAATGACGTCACAACAATGCGTTCTTCAATTTCGCTTGAAGTATACGGGGCCTTTAGGGGCCATTCACACAGAGcgtgtttttgcatttaaaaacgtGACTATGGGGGACAGTTTTCTTTAGCTCACTTATCGAATATCCATCTAGTGCATGTTTACCAAGAAAAACGATGGGGATGCATAAACTCAGCCCGCGTGAACGGCCCCTTAAATTGCATTCGAGgtccattttaaatgctttacgCGCCagttaaaaatattgcaagcgATAATGTATGCTAACAGTTATCCGTCTTTGAGACTTTTAAAGTTATTGACAataatttaaagctttttttttaattaactgtcCGGTGAATGGTTTTCTTGAAGCCTTGCTGGGTCCTAAGAGACGCGTGGAGAACCGGGACAGTTTGTGCGCGTTTCAAAGAGAGGAGACGTTCTCTCAATAACACTGTGGGTATCAGGAGTCTCTCACCGCCCACAGCGCCACACAGTTCACCTTATCACAGGATTGTATGATCTGAATTATGCTGATCAGCAGAGATGTGGACTAATTCTTCTGTCATTcagtttacattatttttatttccattttcatcttccgatttttttttttgcacaatctCTCATATCGTGCAGCTTTGACGGCtggtctctcaaaaaaaaacgACACATCTAGAATAGAGGAACCTGCACGATACTCTCAGGGAGGAAGTTAGAACTCATCATATCGGCAGACAGATGCTTGGCCAGTTGAGCTCTCCCATCACTAAGGTGCAGGATTCTTtctaaatgaaactgaaatgaaattctCATTCTGGGAGGATTTTACCGCAGTTATTAATGAAATCGTTAAAGATTTAATAGcaaaaaatcatcataaatcGGTGTGAACAGTTTCCCATCAGGTATTTACTACACAGTTTCTTATTACGTTGTTTTGGAGAATCATGATCCAGTAgagtattttcttttctctgtagTTCAATAGCCAAAGTGTGGTACAGTTGTACTGTATTATGTCACTAGTTTTATAGCACATTATCATActacatgttttgttttcaatagTAAGTTATTGGTTACAAAGAGAGGAAAGACAGTTTGGCATAGACCTCCAAAAATAATTAAGGCTTGAGAATATCTttatcattgtaatttttttttttcttttctcaattattattatttttttatgtattagaTGTTTACAGTGTAAGGTGTCCTGTGCGGTCTCACTTTGtgactgtgtatatatatttgactaGGTGAAAGATGCTGCTATCCTGACCGTGAGCCATACGCTTATGGGCATGTcatcaatgtaataaaagatCAGAACTCTGAACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126176 lncRNA downstream 20990 2573311 ~ 2576906 (-) True G85165
TU126193 lncRNA downstream 89935 2506178 ~ 2507961 (-) True G85177
TU126188 lncRNA downstream 111692 2485194 ~ 2486204 (-) True G85174
TU126187 lncRNA downstream 113969 2482247 ~ 2483927 (-) True G85173
TU126127 lncRNA downstream 286425 2311243 ~ 2311471 (-) True G85119
TU126235 lncRNA upstream 75034 2678722 ~ 2679291 (-) True G85214
TU126237 lncRNA upstream 76356 2680044 ~ 2680317 (-) True G85216
TU126283 lncRNA upstream 188232 2791920 ~ 2792523 (-) True G85235
TU126303 lncRNA upstream 265452 2869140 ~ 2869689 (-) True G85250
TU126331 lncRNA upstream 315497 2919185 ~ 2947389 (-) True G85257
XM_043254145.1 mRNA downstream 1005 2587744 ~ 2596891 (-) True smarcd2
XM_043254444.1 mRNA downstream 12077 2581058 ~ 2585819 (-) True psmc5
XM_043254340.1 mRNA downstream 121500 2474996 ~ 2476396 (-) True snu13b
XM_043254337.1 mRNA downstream 124326 2470023 ~ 2473570 (-) True crym
XM_043254370.1 mRNA downstream 195211 2398531 ~ 2402685 (-) True LOC122355817
XM_043253150.1 mRNA upstream 1443 2605131 ~ 2616287 (-) False slc4a1b
XM_043253149.1 mRNA upstream 1443 2605131 ~ 2616287 (-) True slc4a1b
XM_043253151.1 mRNA upstream 1443 2605131 ~ 2613753 (-) False slc4a1b
XM_043253233.1 mRNA upstream 100600 2704288 ~ 2708929 (-) True LOC122355185
XM_043254049.1 mRNA upstream 246288 2849976 ~ 2860000 (-) True LOC122355585
unassigned_transcript_1807 other downstream 104105 2493710 ~ 2493791 (-) True trnal-uag_3
TU125823 other downstream 650484 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1700866 891132 ~ 897030 (-) False dlx4b
XR_006252247.1 other downstream 2237584 340273 ~ 360312 (-) False prr12a
TU126277 other upstream 164220 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 487097 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 654843 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 694860 3298548 ~ 3299606 (-) False G85366
TU126483 other upstream 694860 3298548 ~ 3299606 (-) True G85366

Expression Profile