RNA id: XM_043254413.1


Basic Information

Item Value
RNA id XM_043254413.1
length 3011
RNA type mRNA
GC content 0.44
exon number 11
gene id ghdc
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5477522 ~ 5486280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacaaaagaagaagaagaagttgtTTTCAATGTTTGGTTTCGGTTTTCAATAATGACAAGTCCATCAAAATGAGGCAGACCCATCAGCGTTATTTGTGGACAATTTTACCATGTTTTGTTGCACTGTTGGCTGTGACCATTACATGTGCTCCTGTCACCGCTGTCAGTGCGCTCTTATTCCTGTGTGTCTGCTGTGTGGCTCTTCTATGGATGATAAAGATCAAGGATCGCTCCGTATCGAGTCTTTTGGCTCAGTATGTGGCAGTGAAAGCAGTGTGCTGGCTGGGGAAACGCCAGAGAAACAGACTAGAGGCAGACACGAGGGACATTCATCGCGTTCAAGAGGAGACTCTGCTAAAGCGTCTACAGAAACACTCCGACACAGTTTACGGCAAACAGTACGAGTTCACATCAATTAAAGATGTAGAAACATTTCAACAGCGCCATCCGATCACGGATTACGACCATTATGAAAAGTTTGTGGAGCGTGTGGCTAAAGGAGAGCAGAATGTTTTAATATCGGAAAAGCCTCTTATTCTGGCAATGACATCAGGAACATCTGGGTCCAGCCGTATGCTTTTGAGCACCAAAGACACCAATACAGAATTCTTCCTACAGGGGGTGACAGTTTGTCTAGATGCCATGAGACAAGCCTTTCCAGCTACCGGCTGTCTCCAGCAAACCCTGAAGCTCTTTTACTCACCCATTTTTCGTCAGAGTGAGGCAGGTATTCCTATCGGCCCTAACTCCTCAACACCTGCCTCTTCTAAACACATGCTGCATCTGTACACCACGCCAGCACCCGTCTATCAGGTGCTGAATGAGAGAGATGCGTTATATCTCCATCTGCTGTATGGGCTGAAGGACCACAATCTTGGCATGCTGGAATCCAACTTCTGCTCTACCGTCTTTTATGCCTTCAGAGCCCTTCAGGAACATTGGAAAGATCTTGTAGTGGATGTGGAAGTGGGCATGATCAGCTCCAGACTGAACCTGAAGGCTGATGTGCGCTGTGCCCTAGAGAAAGTGATGAAGCCGGATCCAGAGAGAGCTGCTGAGCTCACAGCCCAGTTTGAAAAGGGCTTTGAGGGAATCGCACTCAGGATATGGCCCCAACTACACCTGGTTCTGACAGTGGACTCAGGCTCCAACCAGATTTATGGGGAGATGTTACGGCAGCACTACTGTAAAGGTGTCCCGTTCTACTCCCCTTTCTACGCTGCCACTGaagGCCTGATAGGTGTGAACCTGTGGCCTCAGCAGGAGAGCAGACAATATCTGCTGAGTCCTCGCTCCATGTTCTATGAGTTTATACCAGTGGGGGATCTGGATTCGGCGCGGCCCAAAACTCTCCTAATGGAGCAACTCCAGGAAGGACATAACTATGAGTTGCTGGTCACCAATGCTTCAGGATTGTTCAGgtaTCGCATTGGAGATGTTGTGAAAGTAGTTGGATTTCATAACCAGTGTCCAAAAGTGAAGTTTGAGTATAGGCTTGGGCAGATGTTGAGCGTGCGTGGTGAGAAAGTGTCTGAAACACTGTTTTTGGGGGCTCTTAAGAGGGCAGTGACACAGTGGCCAGGAGCCAAATTAATAGACTACAGCTGCGTTGAGAGCGGAGTTTTAGGCAGTGCATCTGGAATAGCTCAACCACATTATCTTGTGTTTGTTGAGCTAAAGGGTGTGAGGAACCTCTCAGAGGAACAAAGATACAAGCTAGATCACTGCCTCCAGGAGGACTCTGATATCTACCGATCCTTCAGGATAAAGGGCAGCATTGGACCCATGAGAGTTCAGCTCGTTCGTGATGGAACatttcaagaactgaaagatcGCTTGATGGCCTTCTCCAGTACTTCGTCCAACACCTTCAAAATGCAGCGTGTTATACGCAGGAGAGAGTTTGCAGACTTTCTACTGCAGAGGGCTTTTTCCTGAGCATTTCAAATAGATATGAAAGAAGCAACGTTTTTGGCAATGCCAAAATATTTTCTGCTATCCTAGTTTTACATGCAGAGATAATAGATGGTTCctttaaaaagtgttacaaAGTGGTTCAATCTCATTtctaaaacagttttttgtttgaGCATTCAGACCAGCCAAAACATAGCAACATGAGTTTAGGATGGGACTATTAGTTTGTCACCAATGAAAGTCACAAAGATTGTTTGTAAAACAGGTTTTTGCTGCTAGAAAGATGGTTCTTGATCCTAGTCTTGggctgcgtttcccaaaagtTTAATTTGATCATACAGTCATCATTTGATCATTTGATTGGTTTCAATGGGTCTACATCGATATACTTAAGcttacaatgcttttgggaaacataGCCCTGGAGGATCCCAGTACTGCATATTTTGGATGTGTTCcttatttatctattataaaTAAGGGTGGTCATGACCTTCCACCTGTTTTAAACACCTTAGTCTTATTCAAATTAATGTGACACCCTATCAAATGAGCAAACATCTAAGCAGGTAAGCCAGCATGCAACtattatataaaacagaaatgaaggTACTTACAGTGTGGACAGGTCAGTCTTTATAATAAGAAAAGGCAGACTTGACAGTGTCTAATGTGAATCAGTGTTCTGTTTTTGACTGATGTACTTACCATTTCTACTTTTCCTATTTCCTCCCAACTGATGGGTACATTTCTATTATCACCTTATACCTGGTAGATAGCATTCTGAGCTTGAacgtctgtatatattttatgttagaTTGAGTCAGGGACAGCATTGGATTGCCATTTGCTTTACTGTGGAATCACAGAGAAGGATAGCCCAGCTCACCAGATGTTGGACAGAGGTACAGGTACTTTCGTCATTCTTTTCAGGCTGATACTGATACCTTTCTGATTGTCCAAGAAATGACTGAACATTTTATAGCGGGCAGCAAACAGAGAACATAGCAAATTTTTTACACTGTGTAATGCTGTGGAGAAGTCTTGCTTTAAGTGTGTatggttattaaataaaatatgcataatgaCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127056 lncRNA downstream 51011 5423084 ~ 5426511 (-) False lsm5
TU127055 lncRNA downstream 51395 5423084 ~ 5426127 (-) False lsm5
TU126767 lncRNA downstream 1024246 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1064160 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 1065322 4411340 ~ 4412200 (-) True G85569
TU127129 lncRNA upstream 241024 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 324377 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 334069 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 351092 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 352279 5838559 ~ 5838957 (-) True G85893
XM_043254308.1 mRNA downstream 51529 5423503 ~ 5425993 (-) False lsm5
XM_043253097.1 mRNA downstream 57656 5415899 ~ 5419866 (-) True emc9
XM_043253686.1 mRNA downstream 110379 5360364 ~ 5367143 (-) True pelo
XM_043253844.1 mRNA downstream 147289 5280381 ~ 5330233 (-) True ccser2b
XM_043253798.1 mRNA upstream 1520 5487800 ~ 5504829 (-) False stat5b
XM_043253797.1 mRNA upstream 1520 5487800 ~ 5504829 (-) True stat5b
XM_043253256.1 mRNA upstream 48893 5535173 ~ 5540436 (-) True foxh1
XM_043253870.1 mRNA upstream 78328 5564608 ~ 5600663 (-) True adam11
XM_043253871.1 mRNA upstream 83056 5569336 ~ 5595564 (-) False adam11
TU127052 other downstream 51011 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 51395 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 80610 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 80610 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 80610 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 498709 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 504633 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 565443 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 578018 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 1184039 6670319 ~ 6671247 (-) True G86049

Expression Profile