RNA id: XM_043254415.1


Basic Information

Item Value
RNA id XM_043254415.1
length 2150
RNA type mRNA
GC content 0.39
exon number 3
gene id neurl2
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8102699 ~ 8105036 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGAGCTCTCTTTGCACAGATCTCTATGTACTAAGAAGATAAATGTTGctaagaaaaatatgcaacaCAAGCCCACTCTGTAAGTCCTCGTGAGGAccattcagtatttttttttaaagatgaacagCTAGATCTATAAGATACAGTAGATAGTGAATTGTCAATGAGCAGCAAAAACTCCTCCCAGTCATTACTCTTCACTCACCATATCTGTCAGCTATTTAAAACCACAAAACGACACATGCAGGAGGTCAAAAATAGTCAGCCCTTCCCAAGCCACAGGAGTACCATGGTGGAGCTGTGTGCTAAAAAGATCATGCTTTTAACAAGGACTATCCCTAGAGAAGAGCACAGTAAACACTgagaataatgtaaatattctgCTTGAaaaactgtcaaaatggCAGCGGTTTTGGGTCAGTTTATGGAATTCCATTCAGTGCATGGGACAAATGTGAGACTGGACCCATCGGGGACTCAAGCCACCCGAGTAGAAAGTTTTGCAAATGGCGTCTGCTTCAGTAAAGACCCTTTAAGCCCTGGAGAGATCTTCCTAGTGGAGATTGAAGAGAAAGAACTGGGATGGTGTGGTCATTTAAGGATCGGGCTTACTGCTCATGACCCTCGAACACTGGAAACCGTGCCAGAATATTCTCTGCCTGATCTAGTGGATATGGGAAACAGCTGGGTATTTGCAATAACGAGAAATCATAATAAAGTCATTGAAGAAGAAGCAGAAGGTGGTGAACAGCCAAATGTTGGTGATGACGCAGAAAACAAgcctaaaacatttttcacagaCACTCACCtgtatatagaaaacattggcATACCCAGAGACAAGTTGGTGGGACGCAGTCGACCCGGGAGATTCAGTCACATCCTGGATGATCTGTACAAAACCAACGCTCTACCCCCCACTGCCCGTCGCAGTCGGATTGGGGTTGTCTATGTACCTAAGGGGCAAGGTTATGGCGACATGCACATAATCGTCAATGGTGAAGACATGGGAGCCTCTGCCAAGAGGATCCCCACCAATAAGCCACTTTATGCTGTTGTGGATGTATTTGCAGCTACTAAATGTGTTCGGATTGTCCAGGTGGAATATGGCTTTGCCTCACTGCAGACACTCTGCCGAAAGACAATTCAGAAACACATCGTTCACAGAATGGCTTTGGACTGGTTGGAACTTCCGGAGAAACTTAAACACTATTGCAAATATGAGTGAGCATAACTTATAAAACATCTGAGCAGCAATGCCTTTAAGACTTAATGTGGCtggaatgttgtttttattctccCTTTCAACGAAAAAATTCCACCTTTTCAacgaaaaaaaagttattttgaagcACTTGCACTGTTACTAAATAGTGCTAATACTCATTTTAATGTACTTAAATTGTGAATCTTATACTCTGATACTGTGAGTGAGTCGAAAATGCATGGCTATTGGCCCTGTAAACCTgtcttaataaataatagttcagggctgtccaaactcggtcctggagggtcagtgtcctgcagagtttagctccaaccctaaaactaaaactaaagctcTTACTAGGCATGTTAGAAACATGCAGGAGTGTTGAGGCAGGTTGGACCTAAACTCtgaataagaaatattattagaaatgttatttatgataAAAGCTCTGTGGTATTATTATAGGGGTAAAATATACCATATAATGCAGTGCAACCAGCGTACATtgataaatgtacaaataaatgttaatgtgtaATTACTGATACacacaggattttttttctcgCTCTAATTTTAATCATGTCGAGGCAGTAGACTTTATAGGGTTAAATGCCCATATGCCATATTTAAATGTCAACCTGCTGGTCTTGACATTTCTGTTGCGTTTGTgaatttttcattcaaaacgTATTTTCTTTGCCAACtgtaaattagtaaataaacgTACTTGAATTTTCACTTGTGATCTTTGACCTTTGAACCCCActgttttcattactttttttttaaaaaaaaggttgaggTTGCTGAAACATTCCTGAAACACATTAAAGCATTCATTCTTTAGCCTGTCATAAAATTACTTTATTCGTAATGTATTTGATTAATCTTTTGAATGAATCGATTTAATGAAGCACCTTttctggttt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127924 lncRNA upstream 42525 8056931 ~ 8060176 (+) True G86460
TU127808 lncRNA upstream 255839 7846558 ~ 7846862 (+) True G86374
TU127671 lncRNA upstream 258618 7825272 ~ 7844083 (+) True LOC122355675
XR_006252237.1 lncRNA upstream 258918 7833102 ~ 7843783 (+) False LOC122355675
TU127670 lncRNA upstream 268556 7825272 ~ 7834145 (+) False LOC122355675
TU127947 lncRNA downstream 112 8105148 ~ 8106773 (+) True msrb1b
TU128039 lncRNA downstream 90949 8195985 ~ 8196196 (+) False hbbe2
TU128041 lncRNA downstream 93058 8198094 ~ 8198410 (+) True G86540
TU128037 lncRNA downstream 98547 8203583 ~ 8204143 (+) True G86536
XR_006252254.1 lncRNA downstream 99109 8204145 ~ 8206748 (+) False LOC122355856
XM_043254352.1 mRNA upstream 13374 8086091 ~ 8089327 (+) True rnf151
XM_043253174.1 mRNA upstream 17097 8082634 ~ 8085604 (+) True noxo1b
XM_043253175.1 mRNA upstream 17097 8082700 ~ 8085604 (+) False noxo1b
XM_043254182.1 mRNA upstream 50315 8049576 ~ 8052386 (+) True foxl3
XM_043254223.1 mRNA upstream 56662 8009380 ~ 8046039 (+) True fam20cb
XM_043254419.1 mRNA downstream 124 8105160 ~ 8106780 (+) False msrb1b
XM_043254306.1 mRNA downstream 2150 8107186 ~ 8110679 (+) True meiob
XM_043253005.1 mRNA downstream 5891 8110927 ~ 8115043 (+) True mlst8
XM_043254405.1 mRNA downstream 25809 8130845 ~ 8154082 (+) False grid2ipb
XM_043254404.1 mRNA downstream 25810 8130846 ~ 8154082 (+) True grid2ipb
TU127672 other upstream 258618 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 794472 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 797853 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1580130 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1661175 6440821 ~ 6441526 (+) True G86019
unassigned_transcript_1921 other downstream 600224 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 731412 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 1652237 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 1766628 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 2376579 10481615 ~ 10487341 (+) False LOC122355192

Expression Profile