Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043254444.1 |
| length | 1404 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 12 |
| gene id | psmc5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056710.1 |
| NCBI id | CM032079.1 |
| chromosome length | 20499150 |
| location | 2581058 ~ 2585819 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0000502 | proteasome complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0031531 | thyrotropin-releasing hormone receptor binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| id | description |
|---|---|
| K03066 | PSMC5, RPT6; 26S proteasome regulatory subunit T6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU126176 | lncRNA | downstream | 4152 | 2573311 ~ 2576906 (-) | True | G85165 |
| TU126193 | lncRNA | downstream | 73097 | 2506178 ~ 2507961 (-) | True | G85177 |
| TU126188 | lncRNA | downstream | 94854 | 2485194 ~ 2486204 (-) | True | G85174 |
| TU126187 | lncRNA | downstream | 97131 | 2482247 ~ 2483927 (-) | True | G85173 |
| TU126127 | lncRNA | downstream | 269587 | 2311243 ~ 2311471 (-) | True | G85119 |
| TU126235 | lncRNA | upstream | 92903 | 2678722 ~ 2679291 (-) | True | G85214 |
| TU126237 | lncRNA | upstream | 94225 | 2680044 ~ 2680317 (-) | True | G85216 |
| TU126283 | lncRNA | upstream | 206101 | 2791920 ~ 2792523 (-) | True | G85235 |
| TU126303 | lncRNA | upstream | 283321 | 2869140 ~ 2869689 (-) | True | G85250 |
| TU126331 | lncRNA | upstream | 333366 | 2919185 ~ 2947389 (-) | True | G85257 |
| XM_043254340.1 | mRNA | downstream | 104662 | 2474996 ~ 2476396 (-) | True | snu13b |
| XM_043254337.1 | mRNA | downstream | 107488 | 2470023 ~ 2473570 (-) | True | crym |
| XM_043254370.1 | mRNA | downstream | 178373 | 2398531 ~ 2402685 (-) | True | LOC122355817 |
| XM_043253542.1 | mRNA | downstream | 188158 | 2381934 ~ 2392900 (-) | True | adam8b |
| XM_043253541.1 | mRNA | downstream | 201882 | 2338676 ~ 2379176 (-) | False | exoc6 |
| XM_043254145.1 | mRNA | upstream | 1925 | 2587744 ~ 2596891 (-) | True | smarcd2 |
| XM_043254406.1 | mRNA | upstream | 12077 | 2597896 ~ 2603692 (-) | False | atxn7l3b |
| XM_043254407.1 | mRNA | upstream | 12077 | 2597896 ~ 2603690 (-) | False | atxn7l3b |
| XM_043254408.1 | mRNA | upstream | 12077 | 2597896 ~ 2603690 (-) | True | atxn7l3b |
| XM_043254411.1 | mRNA | upstream | 12077 | 2597896 ~ 2603688 (-) | False | atxn7l3b |
| unassigned_transcript_1807 | other | downstream | 87267 | 2493710 ~ 2493791 (-) | True | trnal-uag_3 |
| TU125823 | other | downstream | 633646 | 1870773 ~ 1947412 (-) | False | ank3b |
| TU125629 | other | downstream | 1684028 | 891132 ~ 897030 (-) | False | dlx4b |
| XR_006252248.1 | other | downstream | 2220746 | 340273 ~ 360312 (-) | False | prr12a |
| TU126277 | other | upstream | 182089 | 2767908 ~ 2781353 (-) | True | G85232 |
| TU126462 | other | upstream | 504966 | 3090785 ~ 3092413 (-) | False | LOC122355711 |
| TU126480 | other | upstream | 672712 | 3258531 ~ 3299688 (-) | False | G85366 |
| TU126481 | other | upstream | 712729 | 3298548 ~ 3299606 (-) | False | G85366 |
| TU126483 | other | upstream | 712729 | 3298548 ~ 3299606 (-) | True | G85366 |
