RNA id: XM_043254449.1


Basic Information

Item Value
RNA id XM_043254449.1
length 4201
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC122355866
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 3004429 ~ 3083353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGTGTCTCAGACTCCGCGAGCGCCGCGCGAGAGCGAGACCTGCGGAGCGAACGCGCCGGATCCTGAAGCGACCGTTACCCTCCAACAGGCGACCTGCCTTTCTCCTTCCCGATTTCCCCCGTATTCCCTCACAGTGTTCCTTGCACTAGCGCTTTCTTTCAGCGCCGGCGCACTTTTTGGTTTATCACAGGTGCGTTTGCTATCCTTTGACGTACTTTTCTCACTCACTGGGAATTTACGGACATCTGAGGATCGTGTGGATGCGCGGCTTTGGAGAGAAGCGGAGATGGAATTGTTGATAATATGCCTTTCTTTTGGGATATTGCAATGCAGTTCGGTGGGAGCCGACTCCATCATTCACATCGGTGCCATTTTTGAGGAGAACGCAGCACGGGATGATGAGGTGTTTCAGTTGGCGATCTCTGACCTCAGCCTCAACGATGACATTTTGCAGAGCGAGAAAATCACCCACTCCATAAAATATATCGAACCCAACAACCCCTTTCAGGCAGTCCAGGAAGCCTGTGAGCTCATGAATCAGGGGATACTGGCTTTGGTGTCGTCGACGGGATGTGCTGCAGCAAATGCGCTGCAGTCTCTCACGGATGCCATGCACATTCCTCACCTGTTCATTCAGAGGAACGGAGACGGTACGCCCCGCGCCGAGTGCCAACTCAATCCCAGCCCTGACGGAGAGCGCTACACGCTGGCCGCCCGCCCTCCCGTGCGTCTGAATGATGTCATGATCACGCTCGTCTCTGAGCTCCGCTGGCACAAGTTCATCGTTTTCTATGACAGCGAGTACGATGTGCGGGGACTGCGTGGGTTTCTGGACCAGGCGTCTCGAATGGGTTTGGACGTCTCTCTGCAGCAGGTTGACCGGAATGTGACAAAGGTTTTTTCCACTCTGTTCAGCACAATGAGGATGGAGGAGCTGAACCGTTACCGGGACACGCTCAGACGGGCCATCCTGTTGCTCAGTCCCCGGACTGCCCAGGTCTTCATACACCAGgCAGTGGAAACAAATCTAGCATCCAAAGATAGTCACTGGGTGTACGCCAATGAGGAGGTTAGTGACACGGAGATCATGGAGCTTGTCCACAGCGCTCTGGGCCGGATGACAGTGATCCGGCAGATCTTCCCCCTGTGGAGGGATACCAACATCCGCTGCATGAGGAACAACCATCGCATCTCCTCGCTGCTTTGCGACCCACAGGAAGGTTACCTGCAGTCTCTAGAGGTGTCTAGCCTGTACTTGTACGACAGTGTGCTGATGTTGGCCAACGCCTTCTACCGGAAGTTAGAGGACAGGAAGTGGCATAGCATGGCCAGTCTGAACTGCATGAGGAAGTCAACCAAACCCTGGAATGGAGGCTGGTCTATGCTAGACACAATCCAAAAGGGGCGGATTTCTGGCCTCACTGGTTTAATGGACTTCCGAAGCAATGGAGCGAACTCTCATGTCCAGTTTGAGATCCTGGGGACCAGTTACAGTGAGACGTTTGGAAAAGATGTAAAGAGGCTGGCAACGTGGGACTCTGATCGTGGGCTGAATGGCAGTCTGAGGGAGAACCGGGCTGAGCATGGCATGCAAGGAATTACTTTGAAAGTGGTGACCTTGCTGGAGGAGCCGTTCGTGATGGTGGCAGAAAACATTCTAGGCCAGCCCAAAAGATATAAGGGATTTTCCATAGATGTTCTAGACGCCCTGGCCAAAATTCTGGGCTTTAAGTATGAAATGTATCAAGTGGCTGATGGGAAATATGGTTCTCCTCAAGCCAACGGGTCTTGGAACGGAATGATTGGAGAACTGATTGGGAAGAGAGCAGATGTGGCTATTTCAGCCATCACCATCACTCCTGAGCGTGAGAATGTGGTGGACTTCAGTAAACGCTATCTGGATTATTCTGTGGGAATCCTGATGACTAAAACAGAAGAGAGACTCAACATCTTCTCCTTGCTGGCTCCCTTTGACCTGGCTGTGTGGGCCTGCATTGCTGCTGCCATTCCTGTGGTGGGTGTCATGGTCTTTCTGCTCAGACGTGTTCAGTCTGTCCGCTCCCAGAATCCTCCTGGGCCCCACCAGCCTGCTTCTGTCACAACGTCCTTTCAAAGTGCCATCTGGATCGTCTATGGAGCCTTTGTGCAGCAAGGTGGTGAATCCTTTATGAGTTCAATGGCTCTCAGGATTGCAATGGGAAGCTGGTGGCTATTTACCCTCATTGTCTGCTCGTCCTACACAGCCAACCTGGCAGCCTACCTCACCGTATCCCGCATGGACAACGCTGTTCGAACATTTCAAGACCTTTCCAAGCAGACAGAGCTGAGCTACGGAACGGTGAGAGACTCTGCTGTGTTCCAGTATTTCAGGGTGAAGGGCACGAACCCCTTGGAGCAAGACAGCACTTTCGCCGAGCTGTGGAGAACTATCAATAAAAATCAGGGACAGGACAACTCTGTGACCTCTCCTGCTGAAGGCATCCGCAAGGTGAAGCGGGATCCGTATGCCTTCCTGTGGGACATGGCAGTGTTAGAGTATGCCGCTCTGACAGATGATGATTGTACGCTGGTGGTCACAGGAAACAGCATGAGCAGCAAAGGATATGGCCTGGCTCTGCAGCACGGCAGCCCCTACAGAGATCTCTTCTCGCAGAAGATCCTTGACCTGCAGGAGAAAGGAGACCTTGACATACTAAAGCAGAAGTGGTGGCCACGCAAAGGTCGCTGCGACCTGGACAAGCACGCGGAGCCCCAGCCGGAGGGCCGTGCCCTGAGACTGCACAGCTTTGCTGGGGTCTTTTGCATCCTAGCGGCAGGGCTGCTCCTGGCCTGCCTGGTGGCCGCTCTGGAGTCATGGTGGAACGGGCCACGCTGTCAGCGGGCACAGCCCAAAGAGGACAAAGAGGTGAATCTGGAGCAGGTTCACCAGCGTTTGAGTGGGCTGATGGAGGACGATCTGGCGCACAAGCAGCTGCCGGGTCAGTCTCTGGAGATCTCTGCCCTGGACATGGGCAGCATGCGTCCACAGCAGAGCTCCCAGGAAGTCATGAGAGATTTCCCCCCTGGGGGCCTGTCCGTGACTTCCTTCCTCCAGGAGGGTCCTGGGGTCGGCCGCGTGCCCGGACGGAGCCTTCCCCTCCCTCTCAGCAGTTCCACTCTGCCACCCTCCATGCGCTGCAAACACCGGGCGCCCAACGGAGGCCTTTTCCGCCAGAGCCCCGTAAAGACACCTATGCCCATCTCTTACCAGGCAGTGCCCGGGGGACCCATCCCAGAAGCCATTGATCCAAGCCATGGGACCTCTATTTGAGACGAGCGGTCTGAGCGTTCTAAAGACTTCTTGCCAAGCAGCCAATCACAAAAACCGTGTTTGGACCAGGTCTGGTTGCATTTATAcaattacatacatacaaacagcTATGGagatctctctttttttcagtacAGATACATACGACTGTGAGACGCTGACTTTCCTTGCCtgtacatatttgtatataacGAGAGACAGCAGTGAAGTCAAAGTGTATTTTGaatattcatgatttttttgaaGTTGAGTTTAAAAGAAGTAATTACCTACAATACAGACTGTTTGAATGGCTTTGTAAATTttgttctaaaataaaaatgagaattccTTGTGGATGTTTTCTAAGTGCCAcgtttaaagatttttatttgaaggAGAAGAGACGGGGAGAAAACAAGTGAAAGAGAAACAATCTGTAAATCTTTTGATCTactaatttttttgtttaatataaaaagctttaaagaGAAATGAATCAAAGAAACCGCAGGTTTGTGGAGGCACCGCTCACGTAACATTTGATCCCAGGGAACAAAGTTTTAGTAGCAGCTCTTCATCATATAATCTCAGTGTGTATGGCAAAATCATCTGTAGAACAACATACACAACACTCGCCTTTAATatcaaatacattataaaaaagacATATGTACATTATATGTACCTGAAATTCTGCGTACTCATATGTAATGGCTGCATTTGAGTCTTTTTAAAGTGTACTCTGAATAGAgagcaaaatataaacatatcaaTATTAACTATGTTGtagaaaattaaatttatcTTGTTCCTGAAACCAGTAGTGATTTTAACATGTTGGAAGAAAATCACCATGGTGTTTGAGATTCTTTTGGTTataaaataaactcttttgCATCAAATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126331 lncRNA downstream 57040 2919185 ~ 2947389 (-) True G85257
TU126303 lncRNA downstream 134740 2869140 ~ 2869689 (-) True G85250
TU126283 lncRNA downstream 211906 2791920 ~ 2792523 (-) True G85235
TU126237 lncRNA downstream 324112 2680044 ~ 2680317 (-) True G85216
TU126235 lncRNA downstream 325138 2678722 ~ 2679291 (-) True G85214
TU126466 lncRNA upstream 73463 3156816 ~ 3159743 (-) True G85355
TU126494 lncRNA upstream 290024 3373377 ~ 3374951 (-) False G85372
TU126495 lncRNA upstream 290024 3373377 ~ 3374951 (-) False G85372
TU126496 lncRNA upstream 290024 3373377 ~ 3374951 (-) True G85372
TU126516 lncRNA upstream 532489 3615842 ~ 3721023 (-) True G85389
XM_043254050.1 mRNA downstream 126719 2870121 ~ 2877710 (-) True LOC122355586
XM_043254049.1 mRNA downstream 144429 2849976 ~ 2860000 (-) True LOC122355585
XM_043253233.1 mRNA downstream 295500 2704288 ~ 2708929 (-) True LOC122355185
XM_043253150.1 mRNA downstream 388142 2605131 ~ 2616287 (-) False slc4a1b
XM_043254261.1 mRNA upstream 6276 3089629 ~ 3103315 (-) True LOC122355711
XM_043254327.1 mRNA upstream 310302 3393655 ~ 3397535 (-) True LOC122355769
XM_043254328.1 mRNA upstream 414519 3497872 ~ 3540155 (-) True LOC122355770
XM_043254485.1 mRNA upstream 641731 3725084 ~ 3730449 (-) True c12h10orf88
XM_043253915.1 mRNA upstream 670225 3753578 ~ 3764451 (-) True vps35l
TU126277 other downstream 223076 2767908 ~ 2781353 (-) True G85232
unassigned_transcript_1807 other downstream 510638 2493710 ~ 2493791 (-) True trnal-uag_3
TU125823 other downstream 1057017 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 2107399 891132 ~ 897030 (-) False dlx4b
XR_006252246.1 other downstream 2644117 340273 ~ 360312 (-) False prr12a
TU126462 other upstream 7432 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 175178 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 215195 3298548 ~ 3299606 (-) False G85366
TU126483 other upstream 215195 3298548 ~ 3299606 (-) True G85366
unassigned_transcript_1808 other upstream 911738 3995091 ~ 3995185 (-) True trnal-uag_4

Expression Profile