RNA id: XM_043254451.1


Basic Information

Item Value
RNA id XM_043254451.1
length 3132
RNA type mRNA
GC content 0.52
exon number 18
gene id rhbdf1b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8215566 ~ 8243257 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTGTGGGAATTTACGGGGCGAGCAGCATGCCTTTTATCTGCAGCGTTGTTGCAAACTTTGGATTTATGATGTGACTGTGTAAAATCACATTGCTTCCGTACTGTTTGGTTATGCACTGACATTACATATCCTCTGCGAAGAAGGTGCATCACACTCAAACGCCGGTTAATGAACAAACCCCGCTGCAAAGCCTGAAAGTCCATCAGAAGCTGGCTGGTAAGGGGAGAGGCGGCAGACATGGCCGAAGCTGAGGACGAGAGCAGGAACAGCAGCCTGCGGAGAAAGAAACCGCCCTGGCTCAGACTGGACATGCCCATTGCTCCGAATCCTGTGGAGGAACATAATAACTTTCTCCAGCCCGTCGTACGTAACAGCTTGTACCTGAGGAGTGCCAGTGTACCTGCTGAAAACATCCAGCTCAGATGCCCACCGGTCGATCCCAACGCCTGCCGCAGACCCTCGGTCCTGCGCAAACCTTCAATTTCACAGACCATCAAAAGGGGCACAGCAGATTGGTTTGGGGTCAGCAATGATGTGGATGCCACTCAGAAATGGCAGCGGAAGAGCCTTCGTCACTGTACCCAGCGCTACGGCAAGCTGAAGCCTCAGGTGATACGTGAAATGGACCTGCCCAGTCAAGACAATCTCTCCATGGCCAGTACTGAGACCCCTCCTCCTCTATACGTCCCCCCCGCACAGCATGGCATGCAGAGGATCGTAGACCCGCTGGCTCGGGGTCGAGCGTTCCGTAATGTAGAGGAAGTGGATGGTCTTAGTATACCTCAGACCCCCATAACCCCCTGCGCCGCTTCCCTGTGCTCCTTCACCAGCTCCCGCTCTGGATTCAACCGACCTCCCCGCAGACGAAAGCGTGAGTCTGTCGCCAAAATGGGCTTCAGAGCGGCTGCTGCTCTGGTGAAGGGACGCTCTTTGCGGGATGCTGCCGCTCGACGAGTGCCTCGGCGGAGTTTCGCTACTGCTAGTTTTCTGGATGAGGACACTGTGGATTTCCCAGATGAACTGGACACTTCCTTCTTTGCCAAGGATGGGCTTGCGCATGAAGAACTGTCCACATACGCAGACGAGGTGTTCGAGTCGCCCTCTGAAGCTGCCATTAAAGTAGCTGGAGACGAGAGAGACCTGACAGGCAGCGCCCTGGAGAGGACAGAACTAGAGCGGAGCCATCTAATGCTGCCTCTTGAGAGGGGATGGCGTAAGGGAAAGGACGGTGCTCTGATTCAGCCTAAAGTGCGATTACGGCAGGAAGTGGTGAGTGTGAGCGGTCAGCGGCGTGGACAGCGCATTACTGTGCCTGTTAAGAAACTCTTTGCCAAGGAGAAGCGTCCTTATGGGCTTGGGATGGTGGGCCGACTGACAAACCGCACATATCGCAAACGCATTGACAGCTATGTCAAGAAACAGATAGAAGACATGAACGACCACAGGCCTTTCTTCACGTATTGGATCACTTTTGTCCATTTGCTGATTACCGTCTTGGCAGTATCCATCTACGGAATTGCACCTGTGGGCTTTTCACAACATGAGACAATTGATTCTGTCTTACGAAACAAAGGAGTTtatgaaaatgtcaaattcaTGCAGCAAGAAAATTTCTGGGTTGGACCAAGCTCGGAGGCGCTGATTCACCTCGGGGCTAAGTTCTCCCCCTGCATGCGGCAGGATCAGGAGGTGCACCAGCTCATTCAGGAGAAGAAGAACAGCGAGCTGCACTCGGCCTGCTGTGTCCGCAACGACCAGTCCGGCTGCGTGCAGACCTCTCAGGAGGAGTGCTCGAGTACGCTGGCATTATGGGTAAAGTGGCCTCACCACCCAAGTGCTCCATATCTGGAGGGGAAAGTGCGTCAATATGGCTCTGTGTGCCATCAAGACCCCAGGATTTGTCTGGAGCCTGCCTCGGTCACTCCTCATGAGTGGCCTGACGACATCACCAAGTGGCCGATATGCACCAGATACAGCACAGGGAACCACACTAACCTGCCCCACATTGATTGTGTCATCACCGGCAGACCCTGCTGCATCGGAACCAAAGGAAGGTGTGAGATTACATCAAGAGAGTACTGTGACTTCATGAAGGGATACTTCCACGAGGAGGCCACGCTGTGTTCCCAGGTTCATTGCATGGATGATGTGTGTGGCCTCCTGCCGTTTCTGAACCCGGAGATCCCGGACCAGTTCTATCGGCTCtggctctctctcttcctgcatGCTGGGATTCTGCACTGCCTGGTGTCCGTGTGCTTCCAGATGACCATTTTGAGGGATTTGGAGAAGCTAGCGGGCTGGCTGAGAATCTCCATTATCTATATCCTCAGTGGGATTACAGGAAACCTCGCCAGTGCCATCTTCTTACCGTACAGAGCAGAGGTGGGTCCGGCTGGTTCTCAATTTGGCATCCTGGCCTGTCTGTTTGTGGAGCTGTTCCAGAGCTGGCAGATCTTGGCACGGCCGTGGAGGGCCTTCATCAAGCTCTCATGCGTCGTGCTGTTCCTTTTCGCCTTCGGCCTGCTGCCCTGGATAGATAATTTCGCCCACATCTGCGGCTTTGTCTCAGGCTTCTTCCTCTCCTTCGCCTTCCTGCCGTACATCAGCTTCGGCCGAATGGACATGTACCGCAAACGTTTGCAGATTCTAGTGGCGCTTACTCTTTTCCTGGGCATCTTCTCCAGTTTCGTCGTACTCTTCTACGTTTACCCCGTCAAGTGCGAGTGGTGTGAGCTTCTCACCTGCATCCCGCTGACAGACAAGTTCTGTGAGAAATACGACCTCAACGCTCACCTCCACTGAGGCCTTGCTGAAGAAGGGCTAGAATGGAGGACAGTTGGACGCCAGCTGAATGATTTGATTAGACTCGACTTTatataatgtactttttaaaggttttattgttttgtttagttttttttctggctaAGAGAAGAGCCCACCCCAGGAGGGAGCAATAATAATCATGCCAGTCGTGCCTTTTCACTCAGTACCAGCTACTGCCATATCCTACAAGATCAGAGCACTTTTGAGGCCAAACTGTATGTAGTGCTACTACAGTGGTAATGTTCGGTAGTGTTTTAGCTACCTGATcacatgtaaaacaaaatacaatgtgACAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252254.1 lncRNA upstream 8818 8204145 ~ 8206748 (+) False LOC122355856
TU128038 lncRNA upstream 8893 8205055 ~ 8206673 (+) True LOC122355856
TU128037 lncRNA upstream 11423 8203583 ~ 8204143 (+) True G86536
TU128041 lncRNA upstream 17156 8198094 ~ 8198410 (+) True G86540
TU128039 lncRNA upstream 19370 8195985 ~ 8196196 (+) False hbbe2
TU128088 lncRNA downstream 48586 8291843 ~ 8292062 (+) True G86577
TU128123 lncRNA downstream 101412 8344669 ~ 8344968 (+) True G86593
TU128273 lncRNA downstream 439132 8682389 ~ 8686117 (+) True G86713
TU128340 lncRNA downstream 630070 8873327 ~ 8873545 (+) True G86756
TU128342 lncRNA downstream 631858 8875115 ~ 8875455 (+) True G86758
XM_043254108.1 mRNA upstream 12814 8201945 ~ 8202752 (+) True hbbe3
XM_043253163.1 mRNA upstream 17662 8195964 ~ 8197904 (+) True hbbe2
XM_043253396.1 mRNA upstream 22203 8191318 ~ 8193363 (+) True aqp8a.2
XM_043254442.1 mRNA upstream 25286 8187553 ~ 8190280 (+) True aqp8a.1
XM_043253084.1 mRNA upstream 29592 8180004 ~ 8185974 (+) True lcmt1
XM_043253553.1 mRNA downstream 35811 8279068 ~ 8288769 (+) True ubald1a
XM_043253552.1 mRNA downstream 49479 8292736 ~ 8303541 (+) True LOC122355370
XM_043254286.1 mRNA downstream 117928 8361185 ~ 8388328 (+) True shisa9a
XM_043253406.1 mRNA downstream 292729 8535986 ~ 8541171 (+) True maff
XM_043253208.1 mRNA downstream 325521 8568778 ~ 8573399 (+) True si:ch211-141o9.10
TU127672 other upstream 371483 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 907337 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 910718 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1692995 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1774040 6440821 ~ 6441526 (+) True G86019
unassigned_transcript_1921 other downstream 462003 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 593191 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 1514016 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 1628407 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 2238358 10481615 ~ 10487341 (+) False LOC122355192

Expression Profile