RNA id: XM_043254454.1


Basic Information

Item Value
RNA id XM_043254454.1
length 552
RNA type mRNA
GC content 0.40
exon number 5
gene id cby1
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8611249 ~ 8612461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTTGCTAGGCTCCCCCGGAATTAGCCGTTTGTTTACACATTTCTTTGGCTTTTAGGAACATCGTTGAAGCGGTCGTTAGGAAAAACTAAAGCAGCGTTGGGAGGTCTGACTGTTTACCTCAAAAATGCCCTTGTTTGGCAACATTTTCAGTCCCAAAAAAACACCACCTCGGAAATCTGCATCTCTTTCCAATCTACATACActggATCGGTCAACACGGGAGATTGAATTAGGTCTGGAATATGGATCTCCGGTGATGAATATTGGCGGTCAGAGCTTGAAATTTGAAGATGGCCAGTGGATTTCAGAGTCGGGAGGTAATGTATCAGGAAAAGAGGTACATCGACTGAAGAAAAGGAATCTACAGTTAGAAGAGGAGAATAATCTCCTCAGGCTAAAGATTGAGGTTCTTCTTGATATGCTTTCAGAGTCAACAGCAGAAACACATCTCATACAGAAGGAACTTGAAGATGTGAGGAGTAATTCTCGaagaaagaaatgataaaaggaaattttcttctttttttatctttttacaggtttttttttt

Function

GO: NA

KEGG:

id description
K23402 CBY1; protein chibby 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128385 lncRNA downstream 73043 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 98004 8511635 ~ 8513245 (-) True LOC122355061
TU128139 lncRNA downstream 266640 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 271434 8339456 ~ 8339815 (-) True G86606
TU128132 lncRNA downstream 272549 8334407 ~ 8338700 (-) False cpped1
TU128428 lncRNA upstream 10836 8623297 ~ 8626329 (-) True G86807
TU128431 lncRNA upstream 14633 8627094 ~ 8630207 (-) True G86809
TU128455 lncRNA upstream 63185 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA upstream 63185 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA upstream 67644 8680105 ~ 8744645 (-) True G86826
XM_043254453.1 mRNA downstream 25 8606637 ~ 8611224 (-) True slc16a8
XM_043254384.1 mRNA downstream 5111 8602210 ~ 8606138 (-) True pdap1a
XM_043253682.1 mRNA downstream 10335 8591741 ~ 8600914 (-) True sh3bp1
XM_043253204.1 mRNA downstream 41175 8556275 ~ 8570074 (-) True tnrc6ba
XM_043253205.1 mRNA downstream 55598 8550384 ~ 8555651 (-) True csnk1e
XM_043254241.1 mRNA upstream 22431 8634892 ~ 8636912 (-) True LOC122355698
XM_043254240.1 mRNA upstream 24950 8637411 ~ 8638883 (-) True LOC122355697
XM_043254245.1 mRNA upstream 55935 8668396 ~ 8681985 (-) True kctd17
XM_043254248.1 mRNA upstream 55935 8668396 ~ 8681982 (-) False kctd17
XM_043254247.1 mRNA upstream 55935 8668396 ~ 8681981 (-) False kctd17
XR_006252259.1 other downstream 92140 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 92884 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 251269 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1222339 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1507031 7103880 ~ 7104218 (-) True G86108
XR_006252240.1 other upstream 70591 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 75037 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 263156 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 869098 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 869169 9481630 ~ 9489290 (-) False ormdl3

Expression Profile