RNA id: XM_043254462.1


Basic Information

Item Value
RNA id XM_043254462.1
length 5099
RNA type mRNA
GC content 0.45
exon number 6
gene id adgra1a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12815191 ~ 12841965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTCGTTAAACACCATCGCGCTGAGTGTTCCACGCTGTGAGATTCATTGGCGGTGTTGCGGTGCATGGTAGTACGAGAAACACTGTCAGAGTATTTCACCTCGGTGATCCTTCTGCATCTGCGGAACAATGAAGATTCGAGAGCCGTTAACGGAACCGAGCGTCATGTAAATCCTTTGGTTGCGctattttgtttgaaaatggAACCGGTTCCTCGGTCCTCGGTTCAAATCCCAAGACCTGATATTTGTCTTCCTTGGAGTAGCCTATAGCCTTTTACATGCGCTCACGATCGTCAAGTCTATCAGATAATGGGACGTAAAGATGGGGTACGACACCAGTTGCTCTCTTAAAAATAGGTAACGTAAGGATATATGAGGTAAATGTTACGTTCACATAGTAGCCTATATCTAATTCTAATACGGTAAGTGATATACACAAAATAGGGTAGCTATTATATTCACGCTCCGgcgttcatttaaaaacattttgtgatgaAGTATTGAATGTGCCATTTTGGTAAAAGGTAAGGGGTGTTGGCTTTGTTTGCTCGTCATAGGATTACGATTTTGGTGACACGAGGGTGTTAAACCGTTGTTAGGGCTCTCAAATGAAAGTAAGACTATTTTAAAACCATCTTCGCGCTGCCTACGTTGTGAAGAGGTCGCACTGTTGTCTTTCTCGAATGCCTATGCTTTTAACATTTCACGAGCGATATTTCTAAAGACTTACGTCACGGCAAATGCGCACGTGCCCGACAGAAATCGCCCGAAAGACTGAAGTTCATCAATTCTGAGCTGACTTTTAAAGGGGGAAAGGGTCCGTGGTGATGTTCgccttgtttttttgcttttttctcgGATGTTCTGCAGCCTCTCCTGCCGGAGAATGACCCCCCCTCAGCGCCTGTCGGAATGCCGTTTCTCTCCGCGTGCACAAGGGCCACGCGCCAGATGGCCACATCATAACCGACTGTGATACTTGATACTATTGCACTAAAGCTGGACCCTAACTTTGCGGATCTGATGGGGATTATTTGCACCCAGTGGTGTACGCCTGCACTGCAGTGATGCTGCTCTGCCTGCTGATTTCCATCATGACATACATTGTACACCACAGcATAATCCGAATCAGCAGGAAAGGATGGCACATGCTCCTCAACTTCCTCTTCCACACTGCCATGACGTTTGGGGTGTTTGCAGGAGGCATCAACCAGATCAAGTACCCTGTGATCTGTCAAGTGGTTGGCATTATCTTGCACTACTCCTCCCTCTCTAGCATGCTATGGCTGCTCTTCACTGCCAGGAATATTTGCAAGGAGGTGTCCAAGGCTCCACCCATACCTCAGGACAGGGACCCTCCCAACCAACCACGCCCTAAAGCCACCATCTTCAGGTTTTATCTGGTCTGTGGTGGGATACCTCTAATTATAGTGGGTGTTACGGCTGCTGTTAGCTTGGATAACTACGGTAGCAGAGATGACGCCCCTTACTGTTGGATGGCCTGGGAACCCAGTCTTGGGGGCTTTTACGGTCCCACTGCCTTCTTGGTCTTGGTAATGTGCATCTACTTTCTATGGACATTCGTGCAGCTAAAGCGGCACCCGGAGCGCAAGTATGAGCTCAAGGCCATGACCGAAGAGCAGCAGCGTCTAGCCGTAGCTGAAATCGGCCATTGCCACGCCGTAAGCGGAGAACCAGGTGAGCATGGTGATCACACAGGCTGCACAGCCATCACAGCCTCCATGCTGGCCAACGAACACTCTTTTAAAGCTCAGCTGAGGGCCACCGCCTTtactctcttcctcttcctggcCACCTGGGTATTCGGAGCACTGGCCGTATCACAGGGCCATTTTCTAGACATGATCTTTAGCTGCCTGTACGGAGCATTTTCAGTCACATTGGGGCTTTTTCTGCTGATTCAGCACTGTGCAAAACGTGATGACGTGTGGCACCGGTGGTGGGCATGTTGCCCCAACAAACCAAAGGTGGAGGTCAACGGAGAACCGGCGGGGAGCACCGCTCCCCTTTCTCAAAGTCATAGCCATACACCATCCCATGGGCAGAACCAAATCCACTGCCAGGTCGACTCGTCCTGCCCAGGTAAACCATTGCTTTCCCCGCACCTTCACTCCCCTTTGCCGCACTGCAAGTTGGGTACTCTACCCTCCACCCAGAACCACACAAGCACCTGCTGTGCCACCCTTCACAGCCCCTCTTCCTTAATCGGGAGCGCGACTCGACCGCAGTCCCTCCCTGACGAATTGCCCCGGCCAACCCTTCCCCTACAAAGCTGCCTGAAGGACAGGTCTAAGACTCGTTCCTTCAACCGACCTCGACCCTGTCTCAGGGACTATTCTTATCACATGACCTCCACCAGCATGGACGGCAGCGTGCACAGCTCCCACCTGGACAGCCCCCACAGTGTGCACCTGGACAACCCTCTCACCTGCCACACGTCCCATTTGGACACTCAACTGTCTTGTCACAGCCCCCACCCGGACAACCAGCTGCGCTGCCCCAGTCCCAGTCCCCACCTCGAGAGTTTGGCTTCGCACGGCCTTCACGATAGCCTCTCCTGCCACAGTGCACACTTGGACAGCCAGCTCTCCTGCCACAGACACATGTGCTGTGCCAAAGCAGACCCATTTTCGAGCATATGCTGCCATAAAGCTGACCCATTTGTCAGCTCTTGCCAGGCCGAGGATCCTGACACGGGTCCACTGGTGTACAGTTGCGCAAAAATGGCTGATAAAGAGGACGAAACCATGCTGCATTTGGATATAACCCCTCCCAAAGCCACTCTGTCGTGCTCCCAGGCCACGCTCAGCAGGAAAGGCACTCTCAGCCGGAGAGGGACACTGAGTCGGAACAGTAGTCAGCATGAGGACTACGTGCTTACCTCTGATTCCACAGGTAACATTAGGACTGGACCTTGGAAAAATGAGACAACCGTGTAGGCCTGTGAATGACGTGctaacctgtttctctctcctgAACTAAACTACTGTGTAGTCCCAGGGCTGTTACCCAAAGGCCCTCTCTTCTTTGAGCTAAGCTACTGTGTAGTCCCTCTGCTGTGACTTCCGCTTTTTCACCGCCCCATATACCTTCTCTTCCCCTTTAAAGAGGTTTGAACCTCTGCTTACCTCTTCTCAGACTTCATTTCATGTTTCATCCCAGCTCCATTCGGTTTGTCCTCTTGCCATTTTGATATGGCAGCAAAGATCACAtgacatgcattttaatttggaTGATTTTTTATAATCAAACTGATTTTTGTACGTGTTTTTTGGGTATGGTAACATAATGTGAAATTATGTCATTGTGGATGTGTGcgagtgtgagcgtgtgtgtatttagtgGGTGAGAAAGTACTgagtgcatgtgtttgtgtctatTTGCATGTGACAACATGCTTGTGTGTATATAGATAGCAAGATCTCCATTTGTGCAAGAAAAGTCCTGTTTTAGAGCCAAAATCTCCCACATTTGTTTTTAgccttttaataaaacaatgctaaatgGATCGCCAAGTGTAAAAACACCAGCACTTAATTTGATTACTTTTAAGGAAAACTGTGAATTATCACTAATCAAATTAAGATTGATCAATGAACATATGTGAGTTACAGTATATGTGCCAAAcagtataataattaaaatacaccTCTTTAAACTGAAATCTACCCCAAAGTACGAAGTAGTCTTGTGATTATGTGGATAAGTGTATGCTTGTCACAACGAAGCTGTCATTTTTTCATCTACAGacataaaaacagcaaacaaataGGCTCCCTGTGTTTCCATGGTGACAAATCATGAAGAGAGGTGCCCAGTCAGAATGCATTTTGAACTGCACATGTGATGTatgcacatacagtatttaGTTACTGGCAATGAGGCGAAGATCAGTTCAAGCCAATGGCCTTACAGAACTAACAttttacattgatcaaaagtctTATGTTGCACTAAATCATTAAAGCATGCTCACCATAATGTAGGAAGCAATTATTTACATGCCTAACAAGCTACGTATAGCTACATATATTCTTGTGTTTGACAGGAACGCATCTTAGCTTACTGGAAACACTCATGGTTATTTATTCTGAGGCAAAAAAAGGAGGGCTTTACTTTCTACTTTAGAAGAAAGGATTTTCATTAACAGTTTATATCACTGTGCCAACTCACCTGCTCACAAAAATCATCTGATTTTAACTCATCTGTCAAACAGGCAGcgagtaaatgaaaacaaaaagaaaaaatgtctcTGCCTACTCATATTGTAAAAGATTATCAGGCACTTTGATTCAAAACAAGTAAATCAAGAATAAAATAGAATCCGAACACTACATTATACAGCAAGTTCAATGAAACATAAGAGTAAGAATTTTGATTcgaaaaatgtatcaaaatgttttaattgaacTCATTCAAGTGCTTTATCtattaaattctatttattatttaattgttttgaatcAGCACCTGATTTACAATATGTAAACTGTCGCAGCTGCAATAGCTACatgtatctatttttattttgtttattattcttaataatACGTGCCATTATTTAATCTCAATGCCAAATGAagaataatgtgaaatatttggaaaattCCTTATGTGGTTTATGTTGGGTTTCTTTGTGAGCTCAGGGATCATGTTACATTTACAACTACACAAGATACAAATTTGCATGAAATGAATATTGGCTATTGACCCCAGAGTGTTTcaccatcaaataaaaaaaaaaatatatatatatgtattaaaatatatttttaactcaaattgCCCTTCACCAGCCAACCCATGCTTTCATCAGATGTGTAGCACATGGATACTATTAAGCTCTCTCTTGAATCCTTGGAGGAAATGAAATTTGTCTAGCTGCCTGATTTACCATGTGTTGTGCTTTATCTTTACCCACACAACCCACCTGTCATTTATAGCAAATGAAAGAACTGCAGTCATTTTTTGGTCAGTACATGTGATTCGTGCTCTGACCTGACCCAAAGccagttgatttattttttttttttttacatttgtcacaattttcaataaatgtattttatcacCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129858 lncRNA upstream 268279 12556682 ~ 12558732 (+) True G87753
TU129812 lncRNA upstream 349102 12476805 ~ 12477909 (+) True G87718
TU129739 lncRNA upstream 586810 12239783 ~ 12240201 (+) True G87669
TU129711 lncRNA upstream 668503 12158246 ~ 12158508 (+) True G87665
TU129710 lncRNA upstream 669196 12157586 ~ 12157815 (+) True G87664
TU130050 lncRNA downstream 58107 12900072 ~ 12900399 (+) True G87891
TU130099 lncRNA downstream 354019 13195984 ~ 13197074 (+) True G87934
TU130188 lncRNA downstream 506984 13348949 ~ 13383848 (+) True G87979
TU130193 lncRNA downstream 518349 13360314 ~ 13361050 (+) True G87981
TU130250 lncRNA downstream 587448 13429413 ~ 13431559 (+) True G88010
XM_043254482.1 mRNA upstream 14027 12791289 ~ 12812984 (+) True gabrz
XM_043254483.1 mRNA upstream 14027 12803744 ~ 12812984 (+) False gabrz
XM_043254110.1 mRNA upstream 53316 12766125 ~ 12773695 (+) True valopb
XM_043254343.1 mRNA upstream 64280 12760393 ~ 12762731 (+) True gall
XM_043253571.1 mRNA upstream 75279 12750626 ~ 12751732 (+) True gjz1
XM_043254358.1 mRNA downstream 16283 12858248 ~ 12859528 (+) True mxtx2
XM_043253995.1 mRNA downstream 18169 12860134 ~ 12877268 (+) True bms1
XM_043253231.1 mRNA downstream 240208 13082173 ~ 13107311 (+) True gfra1b
XM_043253574.1 mRNA downstream 361817 13203782 ~ 13268621 (+) False ablim1b
XM_043253585.1 mRNA downstream 380197 13222162 ~ 13268621 (+) False ablim1b
TU129966 other upstream 64738 12760374 ~ 12762273 (+) False gall
TU129954 other upstream 89362 12732764 ~ 12737649 (+) True G87817
XR_006252241.1 other upstream 882156 11936842 ~ 11944855 (+) False nbr1a
TU129235 other upstream 1125356 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 1742641 11084277 ~ 11084370 (+) True trnai-uau_3
TU130259 other downstream 599978 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 753829 13595794 ~ 13596348 (+) True G88082
TU130395 other downstream 1021126 13863091 ~ 13863702 (+) False gucy2g
XR_006252211.1 other downstream 1052396 13894361 ~ 13904627 (+) True LOC122355339
XR_006252175.1 other downstream 1136215 13978180 ~ 13990754 (+) False rnf157

Expression Profile