Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043254470.1 |
| length | 3214 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 16 |
| gene id | msh2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056710.1 |
| NCBI id | CM032079.1 |
| chromosome length | 20499150 |
| location | 10931862 ~ 10938013 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006301 | postreplication repair | biological_process |
| GO:0006302 | double-strand break repair | biological_process |
| GO:0006311 | meiotic gene conversion | biological_process |
| GO:0043570 | maintenance of DNA repeat elements | biological_process |
| GO:0016446 | somatic hypermutation of immunoglobulin genes | biological_process |
| GO:0045128 | negative regulation of reciprocal meiotic recombination | biological_process |
| GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | biological_process |
| GO:0031573 | intra-S DNA damage checkpoint | biological_process |
| GO:0010165 | response to X-ray | biological_process |
| GO:0045190 | isotype switching | biological_process |
| GO:0010224 | response to UV-B | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0000710 | meiotic mismatch repair | biological_process |
| GO:0032301 | MutSalpha complex | cellular_component |
| GO:0032302 | MutSbeta complex | cellular_component |
| GO:0000228 | nuclear chromosome | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000400 | four-way junction DNA binding | molecular_function |
| GO:0000403 | Y-form DNA binding | molecular_function |
| GO:0000404 | heteroduplex DNA loop binding | molecular_function |
| GO:0000406 | double-strand/single-strand DNA junction binding | molecular_function |
| GO:0003684 | damaged DNA binding | molecular_function |
| GO:0032137 | guanine/thymine mispair binding | molecular_function |
| GO:0032138 | single base insertion or deletion binding | molecular_function |
| GO:0008094 | DNA-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| K08735 | MSH2; DNA mismatch repair protein MSH2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU129351 | lncRNA | downstream | 35715 | 10895841 ~ 10896147 (-) | True | G87406 |
| XR_006252171.1 | lncRNA | downstream | 37145 | 10868848 ~ 10894717 (-) | True | LOC122355137 |
| TU129314 | lncRNA | downstream | 67266 | 10816561 ~ 10864596 (-) | False | G87376 |
| TU129316 | lncRNA | downstream | 67266 | 10817958 ~ 10864596 (-) | True | G87376 |
| TU129332 | lncRNA | downstream | 127124 | 10793063 ~ 10804738 (-) | True | G87388 |
| TU129382 | lncRNA | upstream | 66995 | 11005008 ~ 11006938 (-) | False | cript |
| TU129386 | lncRNA | upstream | 133236 | 11071249 ~ 11071765 (-) | True | G87429 |
| TU129411 | lncRNA | upstream | 170883 | 11108896 ~ 11165039 (-) | True | G87449 |
| TU129412 | lncRNA | upstream | 186434 | 11124447 ~ 11126279 (-) | True | G87450 |
| TU129359 | lncRNA | upstream | 321004 | 11259017 ~ 11298534 (-) | True | G87409 |
| XM_043253414.1 | mRNA | downstream | 705 | 10918779 ~ 10931157 (-) | False | fbxo11b |
| XM_043253416.1 | mRNA | downstream | 705 | 10918779 ~ 10931157 (-) | False | fbxo11b |
| XM_043253417.1 | mRNA | downstream | 705 | 10918779 ~ 10931157 (-) | True | fbxo11b |
| XM_043253419.1 | mRNA | downstream | 15978 | 10900253 ~ 10915884 (-) | False | foxn2b |
| XM_043253418.1 | mRNA | downstream | 15979 | 10900253 ~ 10915883 (-) | True | foxn2b |
| XM_043253850.1 | mRNA | upstream | 47029 | 10985042 ~ 10996581 (-) | False | socs5a |
| XM_043253848.1 | mRNA | upstream | 47029 | 10985042 ~ 10995907 (-) | False | socs5a |
| XM_043253847.1 | mRNA | upstream | 47029 | 10985042 ~ 10995906 (-) | True | socs5a |
| XM_043253701.1 | mRNA | upstream | 66993 | 11005006 ~ 11006954 (-) | True | cript |
| XM_043253699.1 | mRNA | upstream | 74459 | 11012472 ~ 11027430 (-) | True | rhoq |
| XR_006252200.1 | other | downstream | 1442550 | 9484946 ~ 9489312 (-) | False | ormdl3 |
| XR_006252199.1 | other | downstream | 1442550 | 9484946 ~ 9489312 (-) | False | ormdl3 |
| TU128628 | other | downstream | 1442572 | 9481559 ~ 9489290 (-) | False | ormdl3 |
| TU128627 | other | downstream | 1442572 | 9481630 ~ 9489290 (-) | False | ormdl3 |
| TU128530 | other | downstream | 2053750 | 8875617 ~ 8878112 (-) | True | LOC122355288 |
| TU129388 | other | upstream | 104875 | 11042888 ~ 11045882 (-) | True | LOC122355648 |
| TU129464 | other | upstream | 383410 | 11321423 ~ 11322603 (-) | True | G87489 |
| TU129586 | other | upstream | 894866 | 11832879 ~ 11835612 (-) | True | G87569 |
| TU129639 | other | upstream | 1011258 | 11949271 ~ 11951155 (-) | False | G87608 |
| TU129915 | other | upstream | 1711370 | 12649383 ~ 12675472 (-) | False | prr15lb |
