RNA id: XM_043254473.1


Basic Information

Item Value
RNA id XM_043254473.1
length 2089
RNA type mRNA
GC content 0.46
exon number 5
gene id sncgb
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11324401 ~ 11331793 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTCTCTCTGCATCCTGTTCTCTTGCGCCTGCTCGTcgttctctctccctctctctccctctctctctctctctctctctctctcacacacactctctctctctctcattccacTGCTCTCCGTCCAAAGTGTCCGTGCATCCGTCTGTCCCGGCACAGAATCTCTCTGTATTCCTCTCTCCTGTCATCTGAAACTTTCAGCATATAGACAGACACCCTCAGCCCTCGCAAATTCTGCCAGGCCCAGTCCGTCTGCAGAGCACCGTCGTCAAACTCAACGTCCAGGATGGATGTTCTAATGAAAGGATTCTCCATGGCCAAGGAAGGAGTGGTGGCCGCGGCTGAGAAAACCAAAGCTGGAGTTGAAGAGGCAGCTCTCAGGACCAAAGAAGGGGTCATGTATGTGGGTAACAAGACAAAGGAGGGAGTGGTGTCAGGCGTAAACACAGTTGCCCAGAGGACCACCGACCAGGCGAATATTGTCGGCGAAACAGCGGTAGGCAGCGCTAATGAAGTCGGACAGAAGACGGTAGAGGGGCTGGAGAACGTGGCTGCATCAACCGGCATGGTCAACCCGGGTGACTTCTCTCACGGGGGCATGGAAGGAGGAGACGGTGGGGAGGGTTATTAGTCCAGAGGCCCGAAGCTGAAACGGTCCCCTCTCTTCCCTCTGACTCTCCACCTCTGAGTTTCTGCTCCAAAGCCTCACCCCTTCCAGACTCCAGATGTTactgatatttttttgtgaCTGTATGGAAAACCAGAGTTGAAAAAGACTTTCCCTGAGCCCTGTAGCCGTTAGATGTGTGACGCTTCCCCTCCTTCTCCATCTGTGGTGTCGTCATGCTGTTCTCTAGTGTTACTGTCATTCCTCGTTCCATCCACACCtcatctaaaacacacacaaactcatacatatacaaaaaaaaaagaagcccaGAGGCTGATATCAGAGGTTGAGGTGGTCTTTTAGGAGCATggctggaaaaaaagaaacccgCATGATCAGTAATGTAAGAAAAGCAATACATCTCATTTCATCAGGGCATGTAGCAAAGTGCGTCTGGATCTTTGTGAGATCGTAGCCatgtttcaatttatttagTCTTGAAAATGCTGCAATGTACGCAACGACAAGTTGTCTGTACATTAAGAGATACATTACATTCCTTTAGTTCGGTGTGTGTGCTGAATAGAGTTACTGTGTGCTTGACCAATAGACTTATCGTGTGATTTGTTAGAGTAAGaacaaatatgtttattcaCAAAACGTgaacacatactgtatacatagatactgtaaaacaacaaaaaaataacgaCTATCCGTATTGATGTAGCTGTGCTAGACTCGCATTTCTTCATTAGCTTAAACACGAGATTTGGTTCCAGTCGGGACAAGGAGTCTTCTGATGTTATAGGAAGAGATCAAATCTTCAAACACGTTCCTGTTTTGTCCTAGTTTTGTTGCGATGCATGTGAAGTCGGTGTGCGATCATGAATTTGTGATGCCCGCAATGTAAAAGCAATACTACAGCACCATTGCAAAGTTTGTCATTGGTCTGTTCTGTAGCACTGTGCTATGCTGATTCTAGGCACTGTGTTTTACCGAGGGAATGCTAAGAAGAGTAGATCTGACTGTCTTCATTCTCATTTAGCCTTGCCATCATGGCCGCCCAAACCCCATCCCCGTCCTGTCACTCAGCGGTGTGTTCAGATCCACCCCGGGCTTGTGTCTGCTGTAGGTAACTAGGACAAAGCTATCAAACATCGCAGTTTGTTCTTTCTTTGAAGccacaaaaaaactgaagactGCATGTTGCCTTATCAGCACTCCTGTattcacttacacacacatacagacacgcacatgcacacaaagctgatcaaaacacaaaaacacactcttctcgagcttttttttcttgagcttttctctctttgccctctctgacacacacacacacacacacacacacacacacacacacaaacaaatgtcCCACATACGTTTTATGTTGGCATCAAAGCAGGCAAGCTGATTTTATAAACTGTATAAGTGAAATAAAGAGTTTTGTTGAAATCTA

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129367 lncRNA downstream 5480 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 8403 11312472 ~ 11315998 (-) True G87417
TU129457 lncRNA downstream 40815 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA downstream 40815 11278324 ~ 11283586 (-) False G87484
TU129455 lncRNA downstream 51099 11271741 ~ 11273302 (-) True G87482
TU129509 lncRNA upstream 247402 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 247435 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 421263 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 467219 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 467806 11799592 ~ 11800481 (-) True G87552
XM_043253246.1 mRNA downstream 104849 11217292 ~ 11219552 (-) True six2b
XM_043254109.1 mRNA downstream 201563 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 240365 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 269595 11049679 ~ 11054806 (-) True kcng3
XM_043253747.1 mRNA upstream 12673 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 12673 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254262.1 mRNA upstream 44009 11375795 ~ 11392390 (-) True ldb3b
XM_043254263.1 mRNA upstream 44009 11375795 ~ 11392383 (-) False ldb3b
XM_043253225.1 mRNA upstream 62471 11394257 ~ 11420206 (-) False opn4b
TU129464 other downstream 1798 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 278519 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1835089 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1835089 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 1835111 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 501093 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 617485 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1317597 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1338839 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1420118 12751904 ~ 12752678 (-) True G87845

Expression Profile