RNA id: XM_043254478.1


Basic Information

Item Value
RNA id XM_043254478.1
length 1909
RNA type mRNA
GC content 0.38
exon number 9
gene id LOC122355878
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13993668 ~ 13997063 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGACCAGTTGCCAGTCGTCTGCTAACCAGAGGTGGTCTCACACAGAGAGTTGGATATGAgtgttttttctgtctgtgcTATCTGTCTACTTTTTCTAGTAGATTTAGTGTTTCCTAAAAAAGCGTGCAGTAAGCAAGATGTACTGGATTATTTAAATCTTACCAGAGACAATGAAAAATTCACAACATGCCGTCCTGCACTGGACTGGACACACCCCACCATAgtgtattttgatatttatttctACGGCATCCTTTCTATGattgAAAAATCTCAAATCTTTGTACCTCTTTTTTGGATGTCCGTGAGTTGGAACAATGAACGAATCTCTTGGAATCCTAAAGATTTTTGTGGCATTAAAAGTGTGATTTTGCCAAAAGAGATGCTTTGGAAACCAGACCTTTATGTTCATGAGACTGCAGAAAAGGAAGATGGACCACTGAACCCGTATATATATGTTACTCATGATGGAAATGTGAAGATGGAGGATGACCATAAAATTGTCAGCACCTGCACAATGAATGTACACAAATTTCCTTTTGATACCCAAACGTGTCACATCACAGTGTCTTCAATTAATTACTCAGataaagaaataaagctgGTTCCTGCCTCCAATTCCTCAAAGGCGACACAGCTTGCTCGCGAAAGCATATTAACAAAAGGAGAATGGGAGTTCCTCAACATATCCGTCTCGCTCCAAAATGAGAGCTATGAGGACCAAACATTCGACAGGATAAAGTACACGATTTCAGTCAGAAGGTTGCCCCTGATGCATTTCATAAATTTTCAGCTACCTGTATTGTTTTTCCTCGTTTTGGACCTAGCTTCTTTTTTCATACCAGACAGAGGGGACAAACTGTGCTTCAAAGTGACTGTGCTACTGGGAATCTCTGTACTTCTGCTCATCCTAAATGACATTCTGCCATCCAAATCTCACAGATGTCCTCTGATAGCTGTGTACGTCGTTGTCATCTTTTCGTTCATGTTGCTGAGTCTTCTGGAGACCATTTTGGtgatatacttaataaatatgaacTCTGAACAAGACGCTAAGGGGGTTCAGACACCTGAAGATCACATCTCTGACACAGACAACCGGAAAAGACACGTTAATGGAGTTGAACCTCAAATGAATGACACGCAGCTATTGCAGCTGATCCTAGAAGAGCTTCAGAATATCAGACAGAGTCTTGTTACCGATACTTTAAAAGCCAAAACTGCTCAGATTTACTGGTTTGGAACGGTTAAACGTATTAACAGGGTTTTCTTTGTGGTTTATCTCATCTCAGTTTCcctctttcttgtttttatctttCGAGAGTGGAAAGTTGAGTAATTTCAAGCCTTAATACTGTGACAAATGCTCAGATTAGGGACCAATATTACATATATTGCATTACATAACAATATTATGTACATTTCTTCTTGTTGAATGCATTGTTGAATGAGCAGCACcgtatttcatttgattttctgGTAGTTATCTACAGAGATCCTCTCCTGTATGGGCTCAGCCCAACCAAATTaaccactttttttaaaattcataatttaatgtGACGAGTAGCCTACAtcattgattgatttaaattaaaatgaggtAAAAAGAATCACAAGTGTTGAAACCAGAATATGGGCCTTTTTTGCTATTcagcaaacaaaagcaaaatgtttattttatccGAAAAGTCTGCTAGGCTATCCACGGAAGTGCAATTGCTCTTTATTCATTGTAGACTGCTATGCTACTATGGGTGAAAAGACGACTTTTACACAGTAGCGTACATATTAGCATCACTGCCAAtgatcaacattttaaaactgtaaagaaCTGTATGCTCTCTTTGTATATCTTTGTAATactacttaatattttgtgtaataaaGCATGCTTCACAAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130377 lncRNA upstream 276536 13715584 ~ 13717132 (+) True G88111
TU130372 lncRNA upstream 283429 13710004 ~ 13710239 (+) True G88106
TU130338 lncRNA upstream 413377 13580078 ~ 13580291 (+) True G88079
TU130321 lncRNA upstream 453645 13539789 ~ 13540023 (+) True G88063
TU130320 lncRNA upstream 455580 13536166 ~ 13538088 (+) True G88062
TU130514 lncRNA downstream 31363 14028426 ~ 14090868 (+) True G88207
TU130541 lncRNA downstream 127249 14124312 ~ 14131677 (+) False stxbp4
TU130573 lncRNA downstream 145650 14142713 ~ 14218976 (+) True G88238
TU130627 lncRNA downstream 236449 14233512 ~ 14243310 (+) True G88270
TU130624 lncRNA downstream 240350 14237413 ~ 14238303 (+) True G88269
XM_043253194.1 mRNA upstream 624 13978171 ~ 13993044 (+) False rnf157
XM_043253192.1 mRNA upstream 624 13978193 ~ 13993044 (+) True rnf157
XM_043253195.1 mRNA upstream 2874 13978173 ~ 13990794 (+) False rnf157
XM_043253193.1 mRNA upstream 2874 13978179 ~ 13990794 (+) False rnf157
XM_043253196.1 mRNA upstream 21018 13968509 ~ 13972650 (+) True habp2
XM_043254480.1 mRNA downstream 243 13997306 ~ 14000327 (+) True lrrc59
XM_043253091.1 mRNA downstream 108893 14105956 ~ 14131785 (+) False stxbp4
XM_043253092.1 mRNA downstream 108894 14105957 ~ 14131785 (+) True stxbp4
XM_043253093.1 mRNA downstream 108894 14105957 ~ 14131785 (+) False stxbp4
XM_043253090.1 mRNA downstream 110058 14107121 ~ 14131785 (+) False stxbp4
XR_006252175.1 other upstream 2914 13978180 ~ 13990754 (+) False rnf157
XR_006252174.1 other upstream 2951 13978180 ~ 13990717 (+) False rnf157
XR_006252173.1 other upstream 5175 13978182 ~ 13988493 (+) False rnf157
XR_006252211.1 other upstream 89041 13894361 ~ 13904627 (+) True LOC122355339
TU130395 other upstream 129966 13863091 ~ 13863702 (+) False gucy2g
TU130947 other downstream 1313500 15310563 ~ 15312004 (+) False si:dkey-21c1.4
XR_006252253.1 other downstream 1349494 15346557 ~ 15378101 (+) False qki2
TU130987 other downstream 1454431 15451494 ~ 15763376 (+) False LOC122355837
TU130982 other downstream 1766834 15763897 ~ 15766340 (+) False LOC122355837
XR_006252168.1 other downstream 1880177 15877240 ~ 15923990 (+) False baiap2b

Expression Profile