RNA id: XR_006252184.1


Basic Information

Item Value
RNA id XR_006252184.1
length 445
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122355189
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7317500 ~ 7319591 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCTCGCAAATTatagaactttgtttttatttctattttatattagtgttttatttgtaatgtatttaacctatatataataaaactatatcttattataaccaatacgctCGCCTGCCAAAGACTCTGATcaagacctgagcagaacagaccacagAGAAGTCTTCTGagacctgtcttGTAATTTCGCATCCCTCTTCAGGAATAACGGCAGTCACGTCTAGCGGGGAAACCCAGACCGGACCGAACATGCACCTTAGCATCTGCGATTAAATGGGCAGGGCTCAAACCACTTTTGGTGGAGCGTGAACACACTTTACTGTTAATCACAACAAAGGGCTAAGCAAGCACACAACACTGACAAAGTGTGCGATAGAGTATGAGACCAAACGCAACTTTGGGACATCTCAATACAATGaacaaaataagcaaacaaaggGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127489 lncRNA upstream 12652 7303138 ~ 7304848 (+) False G86142
TU127490 lncRNA upstream 12652 7303138 ~ 7304848 (+) True G86142
TU127492 lncRNA upstream 12652 7303138 ~ 7304848 (+) False G86142
TU127494 lncRNA upstream 12652 7303138 ~ 7304848 (+) False G86142
TU127496 lncRNA upstream 12652 7303138 ~ 7304848 (+) False G86142
TU127574 lncRNA downstream 68077 7387668 ~ 7388981 (+) True G86202
TU127593 lncRNA downstream 182987 7502578 ~ 7504499 (+) True G86219
TU127680 lncRNA downstream 381752 7701343 ~ 7701799 (+) True G86275
TU127689 lncRNA downstream 399393 7718984 ~ 7719283 (+) True G86283
TU127673 lncRNA downstream 400801 7720392 ~ 7723861 (+) True G86268
XM_043253235.1 mRNA upstream 25360 7233943 ~ 7292140 (+) True svild
XM_043253234.1 mRNA upstream 33056 7233938 ~ 7284444 (+) False svild
XM_043253238.1 mRNA upstream 83851 7225862 ~ 7233649 (+) False nmt1b
XM_043254021.1 mRNA downstream 46743 7366334 ~ 7374805 (+) False znf281b
XM_043254020.1 mRNA downstream 46744 7366335 ~ 7374805 (+) True znf281b
XM_043254374.1 mRNA downstream 59336 7378927 ~ 7385963 (+) True muc13b
XM_043253219.1 mRNA downstream 83961 7403552 ~ 7472715 (+) True lrp2b
XM_043254401.1 mRNA downstream 154132 7473723 ~ 7486698 (+) False mpp3b
TU127500 other upstream 9271 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 12652 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 794929 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 875974 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1100933 6214919 ~ 6216567 (+) True G85986
TU127672 other downstream 496232 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1385669 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1516857 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 2437682 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 2552073 9871664 ~ 9873895 (+) False LOC122355252

Expression Profile