RNA id: XR_006252231.1


Basic Information

Item Value
RNA id XR_006252231.1
length 1893
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122355629
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12613150 ~ 12638736 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGCGTAAAACCTCCCCGTCTGCGCTCCGGCGCTTTGGTGGTGTTCAGCGTGGAACGGCAACGTCAAACTGTCCTGTCCATTTGGAATCGAGTCTTGGTAGTAAAACCTCGTGTCTTGGATGCCCATTTTAAAGTCCGATCCTCATGGGAATTCCGACGGAGGTGTGTTTTGCAGCACCTCAGATGTACAGCACACCTGAAGAAAGCGCTGGCAGGGAGTCTGCATCCTTCTGCTTAACACACGGCAGCTGTGTTGAGGGAAGATCCCTCTCCTATACCGTGTCATTCCCCGGTGACCGCAGCAATGCCCCTGGTGACCGCCTGCTGCCCTCTTCTTGTTGAAGCTGTCGAGTGCTGAGATGTCCCAAAGTTCAATCTTGTCATGCTCAGGCATCGCTTTCTGCCACCCTCTATCCATCAACCGAGCTGTTTGTGAACCATtatgatatgtgtgtgtctgtgtgtgagcaCGCTTGTGTGCACTGCTCCCTTATTCCTGAACGCAAGATCCCAGCTGCTTCACCCACCtgatttttttacttgcatATCTGTGTAAATGAGTTGTCCAGTAAGGGTCAATGTAATTGATTCGGTTCATCCCAATGAATCACAATAGCACCCTGAAATTGACCCTTTCAACATTTTAGGGATGTTTAAGTAGATTTAtgtggattgtgtgtgtgtgtgtgtgcttgtgtgtgtgtgtctgcgtcgGACCCTGCGGGCTGGGACGTGTCACCCCTTCGTCTCGTCACTGCTAATATGAACTTGAGCATCCAGGCGTGGAGCTGTGACAGATCGGCAGACAGCCCTGCCCCCTCAGCATCCCTTCATCCCTGCTACCTATCTAGCTTGCTTAatcttaaattaatttcaggTCAAAAACGAACCGATCCCTGGCACCAGGCTATGATACCTCACCTGCCCACTGGGGATCACTGGAAGGAAGTGTAACGTCAGATTAACAAGATAGCACATTGTTGACAAGCGTGGGGATTATTTACAGCTGCGAGTCGCTTTATCACCACACGCGACTCCTTTTTTGATCTTTTAGAGAATATGTGATTAATAAACAAACCTGTGAATCGCACGTGTGGTGCTGTCAGCAAACGCAAAATATTTGTGACCTTTTAAAGTGACTCCCGATGCGTTGGGTCAAATGGTGTCGGAAGATGatgttttttgacatttttccacTCTTGACCTTTCCACTAATGTTACAGGAGATCTGTGGAGTGTTTCTGCTCAGTAGCAGTTCACGATCAGGTCTTGCATGCTGAGTTCAGGGTCGCTAACCTCACTGGCAGGTACTTAACCTTTTCACACCACTGACTCAAACACCATGAACTCTGATTTGGAGTACATAGATCTTAAGTgctatagcattttttttttttacacttaaatGTATTAAGTGAATTAAGAATcaaattatcattaatatttataaacacaatttttaatctaaattgtttttattattaagatgttaaaaattattattatttgtaagatttattaaagtattttgaCACAGGACAGTATTTCATACAGGAAGTGAGttgggagagaaagagactatttagtttttttattttattttaatttagcacattttttctgaaaaaaggCTGTAAATAATTTAGATTACTTAATAAGGTGGTGTGTAATTAAATCATGGACActgttgtatatatttgttctttcattttatttaaattttatggccactattaaactaaactaatgGAACAAATTAAAGAATCAAAGAATAAACTTGCTAtggatatatataatatatccaCTAGATACACTTTTAGGGGggtaacaaaaattaaaagcagtgtttttttttggttgtgtgATCTCAAATACTAAAGTAGCTGTTAtat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129849 lncRNA downstream 125755 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 266084 12344898 ~ 12347066 (-) True G87695
TU129706 lncRNA downstream 460413 12152240 ~ 12152737 (-) True G87660
TU129705 lncRNA downstream 461515 12151299 ~ 12151635 (-) True G87659
TU129650 lncRNA downstream 642326 11970529 ~ 11970824 (-) True G87610
TU130017 lncRNA upstream 165960 12804696 ~ 12807646 (-) True G87860
TU130240 lncRNA upstream 727217 13365953 ~ 13368320 (-) True G88003
TU130253 lncRNA upstream 790670 13429406 ~ 13432195 (-) False LOC122355808
TU130263 lncRNA upstream 795158 13433894 ~ 13434125 (-) True G88019
TU130280 lncRNA upstream 819720 13458456 ~ 13459865 (-) True G88034
XM_043254033.1 mRNA downstream 49111 12556682 ~ 12564039 (-) True pdk2a
XM_043254207.1 mRNA downstream 60435 12549656 ~ 12552715 (-) True LOC122355678
XM_043254206.1 mRNA downstream 64221 12488769 ~ 12548929 (-) True myo1d
XM_043254155.1 mRNA downstream 132316 12472889 ~ 12480834 (-) False psmd11b
XM_043254154.1 mRNA downstream 132339 12472889 ~ 12480811 (-) True psmd11b
XM_043254132.1 mRNA upstream 15264 12654000 ~ 12665037 (-) True osbpl7
XM_043254037.1 mRNA upstream 27379 12666115 ~ 12667979 (-) True mrpl10
XM_043254039.1 mRNA upstream 32695 12671431 ~ 12675466 (-) False prr15lb
XM_043254038.1 mRNA upstream 32695 12671431 ~ 12673995 (-) True prr15lb
XM_043253089.1 mRNA upstream 46376 12685112 ~ 12689248 (-) True si:ch211-194k22.8
TU129639 other downstream 661995 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 777538 11832879 ~ 11835612 (-) True G87569
TU129464 other downstream 1290547 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 1567268 11042888 ~ 11045882 (-) True LOC122355648
XR_006252199.1 other downstream 3123838 9484946 ~ 9489312 (-) False ormdl3
TU129915 other upstream 10647 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 31889 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 113168 12751904 ~ 12752678 (-) True G87845
XR_006252221.1 other upstream 972998 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 972998 13611734 ~ 13691338 (-) False tcf7l2

Expression Profile