RNA id: unassigned_transcript_1817



Basic Information


Item Value
RNA id unassigned_transcript_1817
length 81
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-uag_10
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4005107 ~ 4005187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagtggttcaaggcgctggatttaggctccagtctctcaggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 43754 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 284084 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 630156 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 112618 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 170803 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 178395 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 216103 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 216327 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 22550 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 38805 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 73448 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 123324 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 83523 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 133873 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 133873 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 133873 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 162452 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1816 other downstream 1085 4003943 ~ 4004022 (-) True trnal-uag_9
unassigned_transcript_1815 other downstream 2080 4002948 ~ 4003027 (-) True trnal-aag_35
unassigned_transcript_1814 other downstream 2244 4002784 ~ 4002863 (-) True trnal-uag_8
unassigned_transcript_1813 other downstream 5830 3999196 ~ 3999277 (-) True trnal-uag_7
unassigned_transcript_1812 other downstream 6833 3998194 ~ 3998274 (-) True trnal-aag_34
unassigned_transcript_1818 other upstream 1084 4006271 ~ 4006350 (-) True trnal-uag_11
unassigned_transcript_1819 other upstream 9144 4014331 ~ 4014411 (-) True trnal-uag_12
unassigned_transcript_1820 other upstream 11598 4016785 ~ 4016865 (-) True trnal-aag_36
unassigned_transcript_1821 other upstream 12584 4017771 ~ 4017853 (-) True trnal-uag_13
unassigned_transcript_1822 other upstream 21923 4027110 ~ 4027189 (-) True trnal-uag_14