RNA id: unassigned_transcript_1819



Basic Information


Item Value
RNA id unassigned_transcript_1819
length 81
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-uag_12
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4014331 ~ 4014411 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagtggtctaaggcgctggatttaggctccagtctctcaggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 52978 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 293308 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 639380 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 103394 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 161579 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 169171 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 206879 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 207103 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 31774 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 48029 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 82672 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 132548 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 74299 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 124649 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 124649 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 124649 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 153228 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1818 other downstream 7981 4006271 ~ 4006350 (-) True trnal-uag_11
unassigned_transcript_1817 other downstream 9144 4005107 ~ 4005187 (-) True trnal-uag_10
unassigned_transcript_1816 other downstream 10309 4003943 ~ 4004022 (-) True trnal-uag_9
unassigned_transcript_1815 other downstream 11304 4002948 ~ 4003027 (-) True trnal-aag_35
unassigned_transcript_1814 other downstream 11468 4002784 ~ 4002863 (-) True trnal-uag_8
unassigned_transcript_1820 other upstream 2374 4016785 ~ 4016865 (-) True trnal-aag_36
unassigned_transcript_1821 other upstream 3360 4017771 ~ 4017853 (-) True trnal-uag_13
unassigned_transcript_1822 other upstream 12699 4027110 ~ 4027189 (-) True trnal-uag_14
unassigned_transcript_1823 other upstream 13827 4028238 ~ 4028317 (-) True trnal-uag_15
unassigned_transcript_1824 other upstream 18393 4032804 ~ 4032884 (-) True trnal-uag_16