RNA id: unassigned_transcript_1830



Basic Information


Item Value
RNA id unassigned_transcript_1830
length 82
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-uag_21
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4046596 ~ 4046677 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagtggtctaaggcgctggatttaggctccagtctctcagggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 85243 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 325573 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 671645 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 71128 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 129313 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 136905 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 174613 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 174837 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 64039 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 80294 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 114937 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 164813 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 42033 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 92383 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 92383 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 92383 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 120962 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1829 other downstream 2235 4044283 ~ 4044361 (-) True trnal-uag_20
unassigned_transcript_1828 other downstream 3225 4043292 ~ 4043371 (-) True trnal-aag_37
unassigned_transcript_1827 other downstream 3390 4043126 ~ 4043206 (-) True trnal-uag_19
unassigned_transcript_1826 other downstream 4549 4041968 ~ 4042047 (-) True trnal-uag_18
unassigned_transcript_1825 other downstream 6872 4039645 ~ 4039724 (-) True trnal-uag_17
unassigned_transcript_1831 other upstream 86 4046763 ~ 4046842 (-) True trnal-aag_38
unassigned_transcript_1832 other upstream 1084 4047761 ~ 4047840 (-) True trnal-uag_22
unassigned_transcript_1833 other upstream 2235 4048912 ~ 4048992 (-) True trnal-uag_23
unassigned_transcript_1834 other upstream 3394 4050071 ~ 4050149 (-) True trnal-uag_24
unassigned_transcript_1835 other upstream 3554 4050231 ~ 4050311 (-) True trnal-aag_39

Expression Profile