RNA id: unassigned_transcript_1848



Basic Information


Item Value
RNA id unassigned_transcript_1848
length 80
RNA type tRNA
GC content 0.64
exon number 1
gene id trnal-aag_45
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4059496 ~ 4059575 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagcggtctaaggcgctggattaaggctccagtctcttcggggcgtggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 98143 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 338473 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 684545 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 58230 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 116415 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 124007 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 161715 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 161939 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 76939 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 93194 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 127837 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 177713 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 29135 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 79485 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 79485 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 79485 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 108064 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1847 other downstream 83 4059332 ~ 4059413 (-) True trnal-uag_31
unassigned_transcript_1846 other downstream 1237 4058180 ~ 4058259 (-) True trnal-uag_30
unassigned_transcript_1845 other downstream 2237 4057178 ~ 4057259 (-) True trnal-aag_44
unassigned_transcript_1844 other downstream 2406 4057011 ~ 4057090 (-) True trnal-uag_29
unassigned_transcript_1843 other downstream 3408 4056007 ~ 4056088 (-) True trnal-aag_43
unassigned_transcript_1849 other upstream 915 4060490 ~ 4060569 (-) True trnal-uag_32
unassigned_transcript_1850 other upstream 2078 4061653 ~ 4061734 (-) True trnal-uag_33
unassigned_transcript_1851 other upstream 3240 4062815 ~ 4062894 (-) True trnal-uag_34
unassigned_transcript_1852 other upstream 3407 4062982 ~ 4063063 (-) True trnal-aag_46
unassigned_transcript_1853 other upstream 4410 4063985 ~ 4064065 (-) True trnal-uag_35