RNA id: unassigned_transcript_1854



Basic Information


Item Value
RNA id unassigned_transcript_1854
length 82
RNA type tRNA
GC content 0.65
exon number 1
gene id trnal-aag_47
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4064151 ~ 4064232 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagcggtctaaggcgctggattaaggctccagtctcttcgggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 102798 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 343128 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 689200 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 53573 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 111758 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 119350 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 157058 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 157282 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 81594 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 97849 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 132492 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 182368 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 24478 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 74828 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 74828 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 74828 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 103407 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1853 other downstream 86 4063985 ~ 4064065 (-) True trnal-uag_35
unassigned_transcript_1852 other downstream 1088 4062982 ~ 4063063 (-) True trnal-aag_46
unassigned_transcript_1851 other downstream 1257 4062815 ~ 4062894 (-) True trnal-uag_34
unassigned_transcript_1850 other downstream 2417 4061653 ~ 4061734 (-) True trnal-uag_33
unassigned_transcript_1849 other downstream 3582 4060490 ~ 4060569 (-) True trnal-uag_32
unassigned_transcript_1855 other upstream 1032 4065264 ~ 4065345 (-) True trnal-aag_48
unassigned_transcript_1856 other upstream 1989 4066221 ~ 4066302 (-) True trnal-uag_36
unassigned_transcript_1857 other upstream 2157 4066389 ~ 4066470 (-) True trnal-aag_49
unassigned_transcript_1858 other upstream 3156 4067388 ~ 4067467 (-) True trnal-uag_37
unassigned_transcript_1859 other upstream 3321 4067553 ~ 4067634 (-) True trnal-aag_50