RNA id: unassigned_transcript_1870



Basic Information


Item Value
RNA id unassigned_transcript_1870
length 82
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-uag_44
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4075485 ~ 4075566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagtggtctaaggcgctggatttaggctccagtctctcagggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 114132 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 354462 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 700534 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 42239 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 100424 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 108016 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 145724 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 145948 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 92928 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 109183 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 143826 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 193702 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 13144 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 63494 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 63494 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 63494 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 92073 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1869 other downstream 875 4074529 ~ 4074610 (-) True trnal-aag_54
unassigned_transcript_1868 other downstream 1043 4074361 ~ 4074442 (-) True trnal-uag_43
unassigned_transcript_1867 other downstream 2194 4073210 ~ 4073291 (-) True trnal-uag_42
unassigned_transcript_1866 other downstream 3181 4072223 ~ 4072304 (-) True trnal-aag_53
unassigned_transcript_1865 other downstream 3351 4072053 ~ 4072134 (-) True trnal-uag_41
unassigned_transcript_1871 other upstream 87 4075653 ~ 4075734 (-) True trnal-aag_55
unassigned_transcript_1872 other upstream 1089 4076655 ~ 4076734 (-) True trnal-uag_45
unassigned_transcript_1873 other upstream 1253 4076819 ~ 4076897 (-) True trnal-aag_56
unassigned_transcript_1874 other upstream 2212 4077778 ~ 4077861 (-) True trnal-uag_46
unassigned_transcript_1875 other upstream 3375 4078941 ~ 4079022 (-) True trnal-uag_47