RNA id: unassigned_transcript_1873



Basic Information


Item Value
RNA id unassigned_transcript_1873
length 79
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-aag_56
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4076819 ~ 4076897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagcggtctaaggcgctggattaaggctccagtctcttcgggcgTGGGTtcaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126574 lncRNA downstream 115466 3960763 ~ 3961353 (-) True G85435
TU126516 lncRNA downstream 355796 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 701868 3373377 ~ 3374951 (-) False G85372
TU126648 lncRNA upstream 40908 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 99093 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 106685 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 144393 4221290 ~ 4221493 (-) False kcnh6b
TU126718 lncRNA upstream 144617 4221514 ~ 4221766 (-) False kcnh6b
XM_043253277.1 mRNA downstream 94262 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253248.1 mRNA downstream 110517 3963315 ~ 3966302 (-) True csf3a
XM_043254134.1 mRNA downstream 145160 3917420 ~ 3931659 (-) True top2a
XM_043254294.1 mRNA downstream 195036 3766347 ~ 3881783 (-) False raraa
XM_043253704.1 mRNA upstream 11813 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 62163 4139060 ~ 4153875 (-) False p4ha1a
XM_043254364.1 mRNA upstream 62163 4139060 ~ 4153875 (-) False p4ha1a
XM_043254367.1 mRNA upstream 62163 4139060 ~ 4153875 (-) True p4ha1a
XM_043254160.1 mRNA upstream 90742 4167639 ~ 4170922 (-) True dnajc9
unassigned_transcript_1872 other downstream 85 4076655 ~ 4076734 (-) True trnal-uag_45
unassigned_transcript_1871 other downstream 1085 4075653 ~ 4075734 (-) True trnal-aag_55
unassigned_transcript_1870 other downstream 1253 4075485 ~ 4075566 (-) True trnal-uag_44
unassigned_transcript_1869 other downstream 2209 4074529 ~ 4074610 (-) True trnal-aag_54
unassigned_transcript_1868 other downstream 2377 4074361 ~ 4074442 (-) True trnal-uag_43
unassigned_transcript_1874 other upstream 881 4077778 ~ 4077861 (-) True trnal-uag_46
unassigned_transcript_1875 other upstream 2044 4078941 ~ 4079022 (-) True trnal-uag_47
unassigned_transcript_1876 other upstream 2216 4079113 ~ 4079195 (-) True trnal-aag_57
unassigned_transcript_1877 other upstream 3204 4080101 ~ 4080182 (-) True trnal-uag_48
unassigned_transcript_1878 other upstream 268488 4345385 ~ 4345467 (-) True trnal-uag_49