RNA id: unassigned_transcript_1885



Basic Information


Item Value
RNA id unassigned_transcript_1885
length 82
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-uag_53
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4353495 ~ 4353576 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagtggtctaaggcgctggatttaggctccagtctctcagggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126745 lncRNA downstream 40447 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 41591 4311453 ~ 4311904 (-) True G85551
TU126741 lncRNA downstream 48473 4297867 ~ 4305022 (-) False LOC122355775
TU126737 lncRNA downstream 68560 4275337 ~ 4284935 (-) True G85545
TU126735 lncRNA downstream 76096 4275337 ~ 4277399 (-) False G85545
TU126764 lncRNA upstream 57764 4411340 ~ 4412200 (-) True G85569
TU126762 lncRNA upstream 59048 4412624 ~ 4413362 (-) False LOC122355055
TU126767 lncRNA upstream 99179 4452755 ~ 4453276 (-) True G85572
TU127055 lncRNA upstream 1069508 5423084 ~ 5426127 (-) False lsm5
TU127056 lncRNA upstream 1069508 5423084 ~ 5426511 (-) False lsm5
XM_043254333.1 mRNA downstream 48280 4299048 ~ 4305215 (-) True LOC122355775
XM_043253162.1 mRNA downstream 116266 4232549 ~ 4237229 (-) True LOC122355129
XM_043254332.1 mRNA downstream 123456 4217404 ~ 4230039 (-) True kcnh6b
XM_043254160.1 mRNA downstream 182573 4167639 ~ 4170922 (-) True dnajc9
XM_043254367.1 mRNA downstream 199620 4139060 ~ 4153875 (-) True p4ha1a
XM_043253007.1 mRNA upstream 58997 4412573 ~ 4416897 (-) True LOC122355055
XM_043253609.1 mRNA upstream 576237 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA upstream 581296 4934872 ~ 5042763 (-) False LOC122355389
XM_043253841.1 mRNA upstream 926805 5280381 ~ 5330233 (-) False ccser2b
XM_043253843.1 mRNA upstream 926805 5280381 ~ 5330233 (-) False ccser2b
unassigned_transcript_1884 other downstream 1079 4352337 ~ 4352416 (-) True trnap-ugg_10
unassigned_transcript_1883 other downstream 3233 4350184 ~ 4350262 (-) True trnal-aag_59
unassigned_transcript_1882 other downstream 3394 4350020 ~ 4350101 (-) True trnal-uag_52
unassigned_transcript_1881 other downstream 4549 4348865 ~ 4348946 (-) True trnal-uag_51
unassigned_transcript_1880 other downstream 5553 4347862 ~ 4347942 (-) True trnal-aag_58
unassigned_transcript_1886 other upstream 1080 4354656 ~ 4354737 (-) True trnal-uag_54
unassigned_transcript_1887 other upstream 2244 4355820 ~ 4355900 (-) True trnal-uag_55
unassigned_transcript_1888 other upstream 4557 4358133 ~ 4358212 (-) True trnal-uag_56
unassigned_transcript_1889 other upstream 5721 4359297 ~ 4359376 (-) True trnal-uag_57
unassigned_transcript_1890 other upstream 9187 4362763 ~ 4362844 (-) True trnal-uag_58