RNA id: unassigned_transcript_1889



Basic Information


Item Value
RNA id unassigned_transcript_1889
length 80
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-uag_57
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4359297 ~ 4359376 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtagcgtggccgagtggtctaaggcgctggatttaggctccagtctctcaggggcgtgggttcgaatccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126745 lncRNA downstream 46249 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 47393 4311453 ~ 4311904 (-) True G85551
TU126741 lncRNA downstream 54275 4297867 ~ 4305022 (-) False LOC122355775
TU126737 lncRNA downstream 74362 4275337 ~ 4284935 (-) True G85545
TU126735 lncRNA downstream 81898 4275337 ~ 4277399 (-) False G85545
TU126764 lncRNA upstream 51964 4411340 ~ 4412200 (-) True G85569
TU126762 lncRNA upstream 53248 4412624 ~ 4413362 (-) False LOC122355055
TU126767 lncRNA upstream 93379 4452755 ~ 4453276 (-) True G85572
TU127055 lncRNA upstream 1063708 5423084 ~ 5426127 (-) False lsm5
TU127056 lncRNA upstream 1063708 5423084 ~ 5426511 (-) False lsm5
XM_043254333.1 mRNA downstream 54082 4299048 ~ 4305215 (-) True LOC122355775
XM_043253162.1 mRNA downstream 122068 4232549 ~ 4237229 (-) True LOC122355129
XM_043254332.1 mRNA downstream 129258 4217404 ~ 4230039 (-) True kcnh6b
XM_043254160.1 mRNA downstream 188375 4167639 ~ 4170922 (-) True dnajc9
XM_043254367.1 mRNA downstream 205422 4139060 ~ 4153875 (-) True p4ha1a
XM_043253007.1 mRNA upstream 53197 4412573 ~ 4416897 (-) True LOC122355055
XM_043253609.1 mRNA upstream 570437 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA upstream 575496 4934872 ~ 5042763 (-) False LOC122355389
XM_043253841.1 mRNA upstream 921005 5280381 ~ 5330233 (-) False ccser2b
XM_043253843.1 mRNA upstream 921005 5280381 ~ 5330233 (-) False ccser2b
unassigned_transcript_1888 other downstream 1085 4358133 ~ 4358212 (-) True trnal-uag_56
unassigned_transcript_1887 other downstream 3397 4355820 ~ 4355900 (-) True trnal-uag_55
unassigned_transcript_1886 other downstream 4560 4354656 ~ 4354737 (-) True trnal-uag_54
unassigned_transcript_1885 other downstream 5721 4353495 ~ 4353576 (-) True trnal-uag_53
unassigned_transcript_1884 other downstream 6881 4352337 ~ 4352416 (-) True trnap-ugg_10
unassigned_transcript_1890 other upstream 3387 4362763 ~ 4362844 (-) True trnal-uag_58
unassigned_transcript_1891 other upstream 4542 4363918 ~ 4363998 (-) True trnap-ugg_11
unassigned_transcript_1892 other upstream 4704 4364080 ~ 4364160 (-) True trnal-aag_60
unassigned_transcript_1893 other upstream 6857 4366233 ~ 4366315 (-) True trnal-uag_59
unassigned_transcript_1894 other upstream 8189 4367565 ~ 4367644 (-) True trnal-aag_61