RNA id: unassigned_transcript_1901



Basic Information


Item Value
RNA id unassigned_transcript_1901
length 82
RNA type tRNA
GC content 0.63
exon number 1
gene id trnap-ugg_13
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4375527 ~ 4375608 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtaagcgtggccgagtggtctaaggcgctggatttgggctccagtctctcaggggcgtgggttcgaatcccaccgctgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126745 lncRNA downstream 62479 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 63623 4311453 ~ 4311904 (-) True G85551
TU126741 lncRNA downstream 70505 4297867 ~ 4305022 (-) False LOC122355775
TU126737 lncRNA downstream 90592 4275337 ~ 4284935 (-) True G85545
TU126735 lncRNA downstream 98128 4275337 ~ 4277399 (-) False G85545
TU126764 lncRNA upstream 35732 4411340 ~ 4412200 (-) True G85569
TU126762 lncRNA upstream 37016 4412624 ~ 4413362 (-) False LOC122355055
TU126767 lncRNA upstream 77147 4452755 ~ 4453276 (-) True G85572
TU127055 lncRNA upstream 1047476 5423084 ~ 5426127 (-) False lsm5
TU127056 lncRNA upstream 1047476 5423084 ~ 5426511 (-) False lsm5
XM_043254333.1 mRNA downstream 70312 4299048 ~ 4305215 (-) True LOC122355775
XM_043253162.1 mRNA downstream 138298 4232549 ~ 4237229 (-) True LOC122355129
XM_043254332.1 mRNA downstream 145488 4217404 ~ 4230039 (-) True kcnh6b
XM_043254160.1 mRNA downstream 204605 4167639 ~ 4170922 (-) True dnajc9
XM_043254367.1 mRNA downstream 221652 4139060 ~ 4153875 (-) True p4ha1a
XM_043253007.1 mRNA upstream 36965 4412573 ~ 4416897 (-) True LOC122355055
XM_043253609.1 mRNA upstream 554205 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA upstream 559264 4934872 ~ 5042763 (-) False LOC122355389
XM_043253841.1 mRNA upstream 904773 5280381 ~ 5330233 (-) False ccser2b
XM_043253843.1 mRNA upstream 904773 5280381 ~ 5330233 (-) False ccser2b
unassigned_transcript_1900 other downstream 1079 4374366 ~ 4374448 (-) True trnal-uag_63
unassigned_transcript_1899 other downstream 2249 4373196 ~ 4373278 (-) True trnal-uag_62
unassigned_transcript_1898 other downstream 3258 4372188 ~ 4372269 (-) True trnal-aag_62
unassigned_transcript_1897 other downstream 3417 4372029 ~ 4372110 (-) True trnal-uag_61
unassigned_transcript_1896 other downstream 5726 4369721 ~ 4369801 (-) True trnal-uag_60
unassigned_transcript_1902 other upstream 84 4375692 ~ 4375771 (-) True trnal-aag_63
unassigned_transcript_1903 other upstream 1246 4376854 ~ 4376934 (-) True trnal-aag_64
unassigned_transcript_1904 other upstream 2407 4378015 ~ 4378096 (-) True trnal-aag_65
unassigned_transcript_1905 other upstream 3562 4379170 ~ 4379252 (-) True trnal-aag_66
unassigned_transcript_1906 other upstream 4562 4380170 ~ 4380249 (-) True trnal-uag_64