RNA id: TU139539


Basic Information

Item Value
RNA id TU139539
length 351
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G94308
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16376573 ~ 16376923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttatcttaatttcAATGAAGTTATTATGAAGTTTACTTGCAGTATCTGAGTGAGAATTGTTTTAGTGTAGGTACttccatttcaaataatggAGGCTAATGAAGGGAGTCAGTACTGTATTCCCAAAAGAATTCCAGTAGCCATTTCCGGAAGCGTGTTGTCTTGTAATCATTGTGTGGTATGGTGAAAAGTACTGGCCAGAAAGAACTACCCCAGAACGCATCTATTTATTCCATGAGAATAGGCGGCACACGCAGAGTTTATTACAGGGCGTGTGCGGTCACAGAGTGGGAGTCGTGCTGATTAAAGAGTCTGACTGCTGTCACTTCCCAGAATGCACTTCTGCA

Function

GO:

id name namespace
GO:0015630 microtubule cytoskeleton cellular_component

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139518 lncRNA downstream 44226 16330142 ~ 16332347 (-) True G94298
TU139455 lncRNA downstream 409230 15967014 ~ 15967343 (-) True G94247
TU139429 lncRNA downstream 469082 15907270 ~ 15907491 (-) True G94232
TU139407 lncRNA downstream 491351 15877527 ~ 15885222 (-) False G94216
TU139382 lncRNA downstream 612828 15763424 ~ 15763745 (-) True G94200
TU139696 lncRNA upstream 45743 16422666 ~ 16423793 (-) True G94411
TU139699 lncRNA upstream 52918 16429841 ~ 16430293 (-) True G94414
TU139701 lncRNA upstream 53751 16430674 ~ 16432430 (-) True G94416
TU139711 lncRNA upstream 138934 16515857 ~ 16518826 (-) True G94425
TU139759 lncRNA upstream 190992 16567915 ~ 16569250 (-) True G94453
XM_043254968.1 mRNA downstream 14768 16335024 ~ 16361805 (-) False LOC122356349
XM_043254969.1 mRNA downstream 15517 16335024 ~ 16361056 (-) True LOC122356349
XM_043255786.1 mRNA downstream 72245 16302209 ~ 16304328 (-) True LOC122356736
XM_043254577.1 mRNA downstream 84194 16290165 ~ 16292379 (-) True cisd1
XM_043256346.1 mRNA downstream 86856 16279665 ~ 16289717 (-) True ipmka
XM_043255806.1 mRNA upstream 55772 16432695 ~ 16445739 (-) False LOC122356747
XM_043255805.1 mRNA upstream 55772 16432695 ~ 16445736 (-) True LOC122356747
XM_043255680.1 mRNA upstream 93012 16469935 ~ 16487675 (-) True march5
XM_043255510.1 mRNA upstream 142613 16519536 ~ 16538481 (-) True btaf1
XM_043254797.1 mRNA upstream 166158 16543081 ~ 16546492 (-) True LOC122356270
TU139489 other downstream 84207 16290154 ~ 16292366 (-) False cisd1
XR_006252284.1 other downstream 213820 16011802 ~ 16162753 (-) False pcdh15a
TU139697 other upstream 48774 16425697 ~ 16426535 (-) True G94412
unassigned_transcript_1928 other upstream 70768 16447691 ~ 16447762 (-) True trnah-gug_23
unassigned_transcript_1929 other upstream 1342184 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 1342711 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 2168658 18545581 ~ 18672893 (-) True LOC122356088

Expression Profile