RNA id: TU139837


Basic Information

Item Value
RNA id TU139837
length 456
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G94511
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16984506 ~ 17015657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaaaaaaaaaaaaaaaaaaagacacgaaaaaaaatctacatattGTAAATACTTGGGCAGTAAAAAGTAGATACACAgcattttgtgttaaaataagaatatctgacaaaatatattttgtttacaaaactTTGATACGTGAGACTACACTTAAAGCATCTGTTAAatggtgtttatatattatcataCATGTCCATATTGCACGAGAGTCGTCGGAAAACTTGGTCCTCCCCTTGGCACAGACAGAGAGGTTGTAAGTAAATCTAGTCTGTCTCGACAGGGAGTAGAAGCAAAAAATTGAATAGAAATCATACAAGCATCTTAGAGTACATGTAAGACTGAATAACACATAATACTTGGTTTTGATCTCTCTCTCCTCCGTTTTGTTCTGTCCATCCCTCTGTCTCCGGCGCTGTGTCGTTTCACTGGTCCCTTGATTCATACAACAATTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139762 lncRNA downstream 389775 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 415256 16567915 ~ 16569250 (-) True G94453
TU139711 lncRNA downstream 465680 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 552076 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 554213 16429841 ~ 16430293 (-) True G94414
TU139854 lncRNA upstream 30019 17022103 ~ 17030063 (-) True G94516
TU139972 lncRNA upstream 382666 17374750 ~ 17376237 (-) False LOC122356193
XR_006252401.1 lncRNA upstream 640165 17632249 ~ 17672523 (-) True LOC122356952
TU139990 lncRNA upstream 729644 17721728 ~ 17722300 (-) True G94608
TU140004 lncRNA upstream 798800 17790884 ~ 17791890 (-) True G94619
XM_043255788.1 mRNA downstream 9017 16964295 ~ 16975489 (-) True fhip2a
XM_043255593.1 mRNA downstream 27981 16923937 ~ 16956525 (-) False ablim1a
XM_043255906.1 mRNA upstream 220849 17212933 ~ 17365849 (-) True LOC122356833
XM_043254697.1 mRNA upstream 383909 17375993 ~ 17387006 (-) False LOC122356193
XM_043254696.1 mRNA upstream 384634 17376718 ~ 17387004 (-) True LOC122356193
XM_043254725.1 mRNA upstream 555330 17547414 ~ 17548604 (-) True LOC122356215
XM_043256024.1 mRNA upstream 706853 17698937 ~ 17713567 (-) True zfand3
unassigned_transcript_1928 other downstream 536744 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 557971 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 692140 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 821753 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 727023 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 727550 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1553497 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1553497 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1553497 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile