RNA id: XM_043254697.1


Basic Information

Item Value
RNA id XM_043254697.1
length 1609
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC122356193
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17374750 ~ 17387006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGCTGGAGTGTGCGCGAGAGAGCGGGTGAGCGGACCGTTCCAGTCCGTGTGTCTCTGTGCGCGTGAGCAGTGGTCTGCCGTCATTCATGGGGATCATGTACGGAGATGGAGACCGGCTCGGACCCCCGCGGAGGGACTGCATGTGTTACCTGGGACCCCCGACCACCTTGATGCCCATCGGAATGCGCAAATCCCCCGAGGTGAGTCCCAGAAGGCTGTCCGACATCAGCCCCCAACTCCGCCAGCTCAAGTACCTGGTGGTGGATGAATCGATTAAAGAGGACCTGAAGTCATCTCGATCAGTTGAGGACATCAACAGCGCGTCCATCGAGGAGAGGATCTTGAGAATCACCGGCTATTATGGCTACCAGCCGTGGAATGCCGTGTATAAGAGGGAGGACCGGCCGAGGGAGAACATCGTGGGCACTGCCGATGGACAGGCGATGGTGGGCGGAGCAGGGGCGGAGTCAGGGACCGGAAGGCAGAAATTAAACTGCTGTGTGCGAGTGACAGCCGTCCAAGTGCGAAAAGCAATATGGGGCGTGGCCATGGTGATGTGCGTGTGCTCGTCGTGGGCAGGCTCCACCCAGCTGGCCAAACTGACCTTCAAGCAGTACGACGCGCCTTTCACTCTCACGTGGTTCGCCACCACGTGGAACTGCCTCTTCTTTCCTCTGTACTACATTGGACATCTGTGCAAGAGTCCTGAGAGACAGACACCAAAACAGAGGTTTAGAGAGTGCTGTCGGTTCTTCGGGGACGATGGACTGACGGCGAAGGTGTTCTTCACTAAAGTGGCTCCTTTTGGCCTGCTGTGGATTATGACAAACTACCTATACCTTCAGGCTCTGAGAAAGATCAACAGCACTGATGTATCGGCCCTCTTCTGCTGTAACAAAGCCTTCGTCTTTCTCCTGTCCTGGATTGTGCTGCGGGATCGCTTCATGGGCGTCAGGATTGTTGCTGCCATTCTGGCCATCGCTGGGATCGTGATGCTGACCTACGCTGATGGCTTTCACAGTCACTCCGTTATCGGCATAACGCTTGTAGTGGCCTCTGCATCTGCCTCTGCCCTCTATAAGGTGCTTTTCAAGCTCGTCTTGGGCAGTGCCAAGTTTGGTGAGGCGGCTCTGTTTCTGACCATTGTCGGAGGCGCAAACTTTGTCTTTATGAGCTTTGTTCCAGTCATACTGTACTTCACACATGTTGAGTACTTCACATCCATTGTTGATCTTCCCTGGGCCTACCTGTGTGGAGTAGCTGGACTCTTGCTAGcatTCAATATTCTGGTGAATTTTGGCATTGCCATTACATACCCTACGCTGATTTCACTTGGAATTGTGCTGAGTGTTCCAGTCAATGCAACTATCGACGTGCTGAAGCATGAGGTCATCTTCAGCGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGgcttcctgctgctgctgctccctgAGGAGTGGGATACGGTCACCCTGCGCTTCCTCACCACCCTCGCCGACAAGAAGACGGAGGAGCACGGCGAGGAGCTCACGGAGTCCAGCGTCCACACGCGCAGCCGGAGTAGAGCCAACGGAGCCGTATCAATCCCCATggcatga

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139854 lncRNA downstream 345930 17022103 ~ 17030063 (-) True G94516
TU139834 lncRNA downstream 360336 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA downstream 383909 16984506 ~ 16992084 (-) False G94511
TU139762 lncRNA downstream 781262 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 806743 16567915 ~ 16569250 (-) True G94453
XR_006252401.1 lncRNA upstream 245243 17632249 ~ 17672523 (-) True LOC122356952
TU139990 lncRNA upstream 334722 17721728 ~ 17722300 (-) True G94608
TU140004 lncRNA upstream 403878 17790884 ~ 17791890 (-) True G94619
XR_006252405.1 lncRNA upstream 505031 17892037 ~ 17900115 (-) True LOC122356989
XR_006252304.1 lncRNA upstream 516191 17903197 ~ 17910716 (-) False LOC122356279
XM_043255906.1 mRNA downstream 10144 17212933 ~ 17365849 (-) True LOC122356833
XM_043255788.1 mRNA downstream 400504 16964295 ~ 16975489 (-) True fhip2a
XM_043255593.1 mRNA downstream 419468 16923937 ~ 16956525 (-) False ablim1a
XM_043254725.1 mRNA upstream 160408 17547414 ~ 17548604 (-) True LOC122356215
XM_043256024.1 mRNA upstream 311931 17698937 ~ 17713567 (-) True zfand3
XM_043256023.1 mRNA upstream 311931 17698937 ~ 17713566 (-) False zfand3
XM_043256393.1 mRNA upstream 335425 17722431 ~ 17730987 (-) True btbd9
XM_043256329.1 mRNA upstream 346932 17733938 ~ 17736960 (-) True glo1
unassigned_transcript_1928 other downstream 928231 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 949458 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1083627 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 1213240 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 332101 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 332628 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1158575 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1158575 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1158575 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile