RNA id: TU140138


Basic Information

Item Value
RNA id TU140138
length 520
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G94728
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18134445 ~ 18136614 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCAATTAAgtaacttttattcatttttctaaacAGCCGACACAACAGCATCAGCATCTGGAGCAGCCGGGAGGTTTACGTGATGTTTTGACCATCGCGCGACTTATTGGGTTGATGTTCTCTGGAAAATGTCAACATCTGAGTATACTGGTGAAACGGCTCCCGAATGGACCGTATTCCAGTTCGCTGAATTCTCCGATCGGCGTAGCTTCGAGGATAAACCCCGTCTCCGAGCGTTTCGAAACAGCTTAAACTTCCCAAACACATTCTCATCTTTCAGAGCACTTGGGACACACACAATACCCGCAAAATCCTTGAAAATGGTGTCTGTGCCTTCGAGGCTTAagaggagaggaaaagagaCTCTTTGTACGCCATTCTTGGCTGATTAGAGGAAACATTCCCAGGATTCCTCAGCGGCGAGCATGGTTCCATCGCCGCTGGCAACATTCCTGTGCCCCCATTCATGCTTATGGATGAGAAAAGAAGAGatattgtgagaaataaacCAATCTGGC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140132 lncRNA downstream 13829 18119803 ~ 18120616 (-) True G94723
TU140122 lncRNA downstream 20824 18111690 ~ 18113621 (-) True G94713
TU140119 lncRNA downstream 26256 18107838 ~ 18108189 (-) True G94711
TU140117 lncRNA downstream 26644 18107430 ~ 18107801 (-) True G94709
TU140056 lncRNA downstream 140196 17940403 ~ 17994249 (-) True G94663
TU140141 lncRNA upstream 813 18137427 ~ 18137641 (-) True G94731
TU140144 lncRNA upstream 4909 18141523 ~ 18141784 (-) True G94734
TU140259 lncRNA upstream 82379 18218993 ~ 18371351 (-) True G94826
TU140260 lncRNA upstream 82379 18218993 ~ 18371351 (-) False G94826
TU140261 lncRNA upstream 82379 18218993 ~ 18371351 (-) False G94826
XM_043254799.1 mRNA downstream 53839 18073731 ~ 18080606 (-) False fndc5a
XM_043254801.1 mRNA downstream 53839 18073731 ~ 18080606 (-) False fndc5a
XM_043254800.1 mRNA downstream 53839 18073731 ~ 18080606 (-) True fndc5a
XM_043255013.1 mRNA downstream 154336 17972876 ~ 17980109 (-) True rhd
XM_043255015.1 mRNA downstream 169575 17960959 ~ 17964870 (-) True rsrp1
XM_043256046.1 mRNA upstream 237254 18373868 ~ 18380023 (-) False LOC122356930
XM_043256045.1 mRNA upstream 237254 18373868 ~ 18379251 (-) True LOC122356930
XM_043256047.1 mRNA upstream 243421 18380035 ~ 18383710 (-) True ftr69
XM_043255034.1 mRNA upstream 321584 18458198 ~ 18504277 (-) False fgfr2
XM_043255032.1 mRNA upstream 321584 18458198 ~ 18504276 (-) False fgfr2
unassigned_transcript_1930 other downstream 414739 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 415266 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1686683 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1707910 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1842079 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 408967 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 408967 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 408967 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 1731399 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 2006982 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile