RNA id: TU140259


Basic Information

Item Value
RNA id TU140259
length 2215
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G94826
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18218993 ~ 18371351 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gGGGggtcaaacatttatttggccTAATCGTACATCTTATTAACACCTGGAAATGTTAGCAAAATAAAGAGTCAGAAAATGTATGTACAGAGACttaactgaacaaaaatatatatttgataaaagcAGTGGTTTAATTCCCCTTTGTCGTAAACTTTGAAATGTGTAGCTGGATctgattaaaactgtaaaacatcattaaaaacagACTAAGACTAAAACCTATTCACTCGCCCAGATCTTCTGACACCCTACAGTTTTCAGGGCTAAAAATTGGAATGTAGAGCTAttcaaacacttaaaaaaagattttttttgtactttttcgtttttttgttgtagttttacATTGTCCCGTAACCATCTCCTAAGAGGACAATTGGTCATTTCACTCATCAGCCCTGAAAAATCAAGGATCGGATGaagttaaaaagagaaaaatgactgaaaagaCTGTGAACAGGGAGCCACGCTCTTCCATCCGCTGCTCTTCTCCTGAGGCGGAAATTCCATCAGTCGTTCCAATCCATACACAGAGCGATTTCCGGACCGATTCccaaaaacccccaaaaaacaaaaacgtgcTTCAGCACAGAGCTCACCGACACCGGACCGGACAAACCGTGAACTAGAGACCGTTATCAGCAAAGATGGTGAAAGAACTCGGTTTCTCTGTAGTATTGCTGTAACTTTAAGATTGTGGCTCAAGtctcatatatttatatatatttatatatatttatatatttcaatctcaaaaagaaaaaaaggataaaGATAAACAGTCTAGGTTGCCACAGTGAAGTGAGGTCACTCTGCAGCCGGCTCCGGGTCCGAGGCTGTGGTGGGCGTGGTCTCTTCAGCGGGGGCCGGGGTTGGGGTCTCCTCAGGTTTTGTGGTCTCCTCTGTGGGCGCGGCTTCTGTTTCCTGGGCGGGCTCTTCTGCTTTAGGCTCCTCCTCCACCGCTTTGGGTTCCGCCTCCGCCTCAGGTGCCGGTGTCTCATTGGTTTCTGCCGCAGCGGGCTCCTCCTCTTTGGTCTCCGTAGCAGCCTGGCCGTTCTCCTCTGGCTTGTCTTCGGCTGTGGGCGTGGCCGAGGACAAGCCAGAGGAGAACGGCCAGGCTGCTACGGAGACCAAAGAGGAGGAGCCCGCTGCGGCAGAAACCAATGAGACACCGGCACCTGAGGCGGAGGCGGAACCCAAAGCGGTGGAGGAGGAGCCTAAAGCAGAAGAGCCCGCCCAGGAAACAGAAGCCGCGCCCACAGAGGAGACCACAAAACCTGAGGAGACCCCGACCCTGGCCCCGCTGAAGAGACCACGCCCACCACAGCCTCGGACCCGGAGCCGGCTGCAGAGTGACCTCACTTCACTGTGGCAACCTAGACTGTTTATCtttatcctttttttctttttgagattgaaatatataaatatatataaatatatataaatatatgagaCTTGAGCCACAATCTTAAAGTTACAGCAATACTACAGAGAAACCGAGTTCTTTCACCATCTTTGCTGATAACGGTCTCTAGTTCACGGTTTGTCCGGTCCGGTGTCGGTGAGCTCTGTGCTGAAgcacgtttttgtttttttgggggggggttttTTGGGAATCGGTCCGGAAATCGCTCTGTGTATGGATTGGAACGACTGATGGAATTTCCGCTTCAGGAGAAGAGCAGCGGATGGAAGAGCGTGGCTCCTGTTCACAGTCTTTTCagtcattttctctttttaacttCATCCGATCCTTGATTTTTCAGGGCTGATGAGTGAAATGACCAATTGTCCTCTTAGGAGATGGTTACGGGACAATgtaaaactacaacaaaaaaacgaaaaagtacaaaaaaaatctttttttaagtgtttgaaTAGCTCTACATTCCAATTTTTAGCCCTGAAAACTGTAGGGTGTCAGAAGATCTGGGCGAGTGAATAGGTTTTAGTCTTAGTctgtttttaatgatgttttacagttttaatcagATCCAGCTACACATTTCAAAGTTTACGACAAAGGGGAATTAAACCACTgcttttatcaaatatatatttttgttcagttaaGTCTCTGTACATACATTTTCTGACTCTTTATTTTGCTAACATTTCCAGGTGTTAATAAGATGTACGATTAggccaaataaatgtttgacgCCCataaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140144 lncRNA downstream 77209 18141523 ~ 18141784 (-) True G94734
TU140141 lncRNA downstream 81352 18137427 ~ 18137641 (-) True G94731
TU140138 lncRNA downstream 82379 18134445 ~ 18136614 (-) True G94728
TU140132 lncRNA downstream 98377 18119803 ~ 18120616 (-) True G94723
TU140122 lncRNA downstream 105372 18111690 ~ 18113621 (-) True G94713
TU140300 lncRNA upstream 81521 18452872 ~ 18456126 (-) True LOC122356994
XR_006252406.1 lncRNA upstream 82024 18453375 ~ 18456126 (-) False LOC122356994
TU140303 lncRNA upstream 169034 18540385 ~ 18540700 (-) True G94843
TU140305 lncRNA upstream 172301 18543652 ~ 18543984 (-) True G94845
XR_006252272.1 lncRNA upstream 174220 18545571 ~ 18561469 (-) False LOC122356088
XM_043254799.1 mRNA downstream 138387 18073731 ~ 18080606 (-) False fndc5a
XM_043254801.1 mRNA downstream 138387 18073731 ~ 18080606 (-) False fndc5a
XM_043254800.1 mRNA downstream 138387 18073731 ~ 18080606 (-) True fndc5a
XM_043255013.1 mRNA downstream 238884 17972876 ~ 17980109 (-) True rhd
XM_043255015.1 mRNA downstream 254123 17960959 ~ 17964870 (-) True rsrp1
XM_043256046.1 mRNA upstream 2517 18373868 ~ 18380023 (-) False LOC122356930
XM_043256045.1 mRNA upstream 2517 18373868 ~ 18379251 (-) True LOC122356930
XM_043256047.1 mRNA upstream 8684 18380035 ~ 18383710 (-) True ftr69
XM_043255034.1 mRNA upstream 86847 18458198 ~ 18504277 (-) False fgfr2
XM_043255032.1 mRNA upstream 86847 18458198 ~ 18504276 (-) False fgfr2
unassigned_transcript_1930 other downstream 499287 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 499814 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1771231 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1792458 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1926627 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 174230 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 174230 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 174230 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 1496662 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 1772245 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile