RNA id: XR_006252272.1


Basic Information

Item Value
RNA id XR_006252272.1
length 920
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC122356088
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18545571 ~ 18672893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGTACTCGTCTCAGTGAGAACACACAAGCAGGCGATGCTCGTGCGCTGAAGGAGCTGGCCAGGGTCTTAGTGCTTCACAGGAGGACAGTGATGCCATATGCAGCCTACGCTCGGAAGCGGAAGGGTTCGAACGACGAGAAGGAAGTGGAGCAGTACGCTAGTCTGGTGGGCCAGACATGTGCAGAGAGAATCCTGCTCTACAGAGCCTAGAACAACCCCTTCTTACCTTACGAccatctgtctttctttctctctgtttgtctttgGAAACATGTAAGAGTTTGTCCTCTTGTACACTTGTCTGTTTATTGTCTTCCTGATTGTTTATTTGTctgcttttcatctttttttttgtcttccagaAGTCTTTTCCCCATCTGTGTGTACagttttgttgggtttttttttttgtactgctgtGCATTGCTTCACTCGCCCAGTCTTTCGTAATCTCTTTGAACtctacttttatattttctggCCAGCATCGCTTTGTAATAATCACGCTCGCGCACATGCAGCCGTTCATGTGTTATCTCATAGTGTATCCCAAAATATAACAACTCACCAATCACATCTTAACTAGCCGTAAAACAAGAAATAATGTACTATAGGGCATACTTTCATTCTGAACCCGTTTGGCTGGGTACTTCTAGACCGTTGTGAACCGTTTGGCCTTTGGTGACATAGATCACTGCTTTCCAAAAGTCCTGATATTTCTGTTCTTCTGAAGTGGTGATACTTTCCCGAGCAGGTGCTATGACGCATGGCTTTGCTGGAGGGTTAAATCAATCCATTTTCCCGTGGAACAGATTTGTCTTTTCTCGATCGAAGTAATAGCTTGagtgcttttgttttaatattattgttttgtttcaaactaaataaaaaaacgacaaaaaaacGAAAAGATTTAA

Function

GO:

id name namespace
GO:0016598 protein arginylation biological_process
GO:0004057 arginyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140305 lncRNA downstream 1587 18543652 ~ 18543984 (-) True G94845
TU140303 lncRNA downstream 4871 18540385 ~ 18540700 (-) True G94843
TU140300 lncRNA downstream 89445 18452872 ~ 18456126 (-) True LOC122356994
XR_006252406.1 lncRNA downstream 89445 18453375 ~ 18456126 (-) False LOC122356994
TU140256 lncRNA downstream 174220 18336840 ~ 18371351 (-) False G94826
TU140317 lncRNA upstream 62014 18623483 ~ 18627312 (-) True G94849
TU140447 lncRNA upstream 354776 18916245 ~ 18916650 (-) True G94941
TU140438 lncRNA upstream 396249 18957718 ~ 18975499 (-) False LOC122357020
TU140483 lncRNA upstream 517091 19078560 ~ 19078839 (-) True G94961
TU140501 lncRNA upstream 608399 19169868 ~ 19170089 (-) True G94978
XM_043255034.1 mRNA downstream 41294 18458198 ~ 18504277 (-) False fgfr2
XM_043255032.1 mRNA downstream 41295 18458198 ~ 18504276 (-) False fgfr2
XM_043255033.1 mRNA downstream 41295 18458198 ~ 18504276 (-) False fgfr2
XM_043255029.1 mRNA downstream 41296 18458198 ~ 18504275 (-) False fgfr2
XM_043255031.1 mRNA downstream 41296 18458198 ~ 18504275 (-) False fgfr2
XM_043254551.1 mRNA upstream 13315 18574784 ~ 18585116 (-) True LOC122356087
XM_043255967.1 mRNA upstream 144880 18706349 ~ 18743542 (-) True LOC122356886
XM_043255968.1 mRNA upstream 144880 18706349 ~ 18742753 (-) False LOC122356886
XM_043255972.1 mRNA upstream 144880 18706349 ~ 18742753 (-) False LOC122356886
XM_043255965.1 mRNA upstream 144880 18706349 ~ 18742753 (-) False LOC122356886
unassigned_transcript_1930 other downstream 825865 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 826392 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 2097809 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 2119036 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 2253205 16290154 ~ 16292366 (-) False cisd1
XR_006252356.1 other upstream 1306544 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 1582127 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1918456 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1919974 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1927316 20488785 ~ 20492076 (-) True G95510

Expression Profile