RNA id: TU140625


Basic Information

Item Value
RNA id TU140625
length 2248
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G95068
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19425563 ~ 19427926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttattaacagGTGGTCGTTTTAGTGcttaaacagctgttttaattaACCCTGACACGGTCATACTGCCGACCTCTAATGAAGATCATATCATTGTGCATGAGTGATGCAGATGAAGAGAGAGTTTGAGATGTAAAGCGGAGCTGTGCCAACAATGCAACGGAAATGCAAACCACGGTATGAGCTTGTGAAGGAGCGCGTTTCCGCAAGCCTGAAGATGCAttgaaatatatcaaataagCGTATTTAAGACTAAGTTTGTTCtcttaaaatgcatgcatggatCAGTATCAACTGCCTTATTTTGTCCCTCAACCATGTAACTGTAATGTAGATCTGACTCACTCTGTACAGtaaatcttttgcattttgcaaaatGTATCTCCATTGATTGCAATGGATCTAACTGAACTGAAGTCCTCCgttttctccaggacctgggaGATCTGGAGAATTTcgcattgtatttatttattcatttattatcttGTCTTTTTGCGTAGCCCCCGAAACGGACTCCGTTAACTCATCCGTCATGTTTCacctttgtgtttttaacagcaaTATAAAGCCAAACAAGTCCAAGTTTCTGTCGAACTTTAGTGTGTGAGGAAGAAACCAGGTTTAGATTGCGGCTCATTTTTGGTAAAAGCACGACTTAGAGTGGTGTTTGGAAAGAGGGaacaaatattagaaatattattgtTTCGTGTTTTCGTCactagaacaaaaaaaatcatgtttcagAAGCAATACagaggttaaaataaaatgagacgGGATTTCTAGgtctgtttttactgcattgtaATCATTCGGCCCTTTTTtggcacgttttttttttttttttttttttgcaactttaaCTTAAAGATATTTAACACTTAATGTTAAATCGATATAATCTAGTTGCTGCCTGTTTGTATCACACGATCAAAATCATTGCAGATAATCATAATGATggctttttacattatttttgacagCTACTATAAAGCTATTagttacaaaaaatgttattgtcttttctcaatgtatttatttcatgcatctTTTACTATTAAAGCATATGAATGTTAATAATACCAGAAAAGGACAGGTACAATAGTAGTTACGTGAGTTATGAATAGAAAAggctaaaataaatcaaataaaaactattattccTGACTTCCTTCTAGAAAAACAGAGAATGCATGTTCAGACGGTATTTTGCTTTGTTCAATGAAAAGCATATCAGCTTTTATAATTGTGATTCAGACTGTTTAACTGTTGACATGAATTTTCatcatgattatattttaagaaagctTCCTTATCAGTATGCAAGAACAGAATAGGTGTTCGCCTACTCAATCTCTCTCCCCtgctctctttatttctctctgtttttgcaGAAACATGCACGTAAGATTAGGATTTAGATTGATTTCATTCAAAAAGGGAAATCTACAACGAAAGTccacgtataaaaaaaaaagcctgttttatttttaaaacatgacatttctgATTGAAACACGAAACGTAATCTTGATTTTATCTGCTGGGAATTTGTTGGACGGGAATAACGTGGgaatataaaagtgtaatacGCGTTATTCAAGTCAAGCGTGTTTTCACTGAACTAACATGAATTAATTGtggttaactaaaactaaaattaaataaaaatgcactcaacatttcaaacaaaaataaattcaattcaatgatTAAAACTTAtatgaacaaaacacaaataaattactaaaacgtGCAAACTGAAATcgaaaaatgtacaataaacaacaataattgaaaacaaaattttaaatgaacaaatatatatttataaatatatttatatatatttttatttactgtaaatcaaATTACGGTAGCAGTTGAAGAAACGCTTGAGagaattctttctttttcccccaGTACACTACTTTAGTCATGAGCTGGTCAGTAATCTAGACCTGGTTAGCTGGTTATCGGTCCTCACGCGTCTTCATTTCAGACTTGTCCCATGTTGCCTGCATCTTGGCGTGCCATTGATTTACTGTATGCAAATTATTTCTGGTTGCAAGTTGCACATTTATAACGATGattgtacttttatatttatttgaaaaggaTGATATCTGATGAGTCACGcatataagaaattaaaatctattctaagaatctctctgtgtttttttcctttcctaCCTGTGCATGTTGCCATCTGTTGTTCGTATTGCTGAAGTCGAcctgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140608 lncRNA downstream 138139 19286037 ~ 19287424 (-) False itga9
TU140529 lncRNA downstream 217294 19201843 ~ 19208269 (-) True G94997
TU140501 lncRNA downstream 255474 19169868 ~ 19170089 (-) True G94978
TU140483 lncRNA downstream 346724 19078560 ~ 19078839 (-) True G94961
TU140438 lncRNA downstream 450064 18957718 ~ 18975499 (-) False LOC122357020
TU140683 lncRNA upstream 163946 19591872 ~ 19593376 (-) True G95110
TU140737 lncRNA upstream 241783 19669709 ~ 19670331 (-) True G95147
XR_006252305.1 lncRNA upstream 390127 19818053 ~ 19835653 (-) True LOC122356282
TU140781 lncRNA upstream 418375 19846301 ~ 19846534 (-) True G95190
TU141149 lncRNA upstream 493076 19921002 ~ 19921640 (-) False LOC122357123
XM_043254861.1 mRNA downstream 25673 19363572 ~ 19399890 (-) False golga4
XM_043254859.1 mRNA downstream 25673 19363572 ~ 19399890 (-) False golga4
XM_043254857.1 mRNA downstream 25673 19363572 ~ 19399890 (-) False golga4
XM_043254860.1 mRNA downstream 25673 19363572 ~ 19399890 (-) False golga4
XM_043254858.1 mRNA downstream 25673 19363572 ~ 19399890 (-) False golga4
XM_043254703.1 mRNA upstream 1910 19429836 ~ 19460397 (-) False kcnk12
XM_043254702.1 mRNA upstream 1910 19429836 ~ 19460397 (-) True kcnk12
XM_043254966.1 mRNA upstream 77936 19505862 ~ 19532003 (-) False fbxo11a
XM_043254965.1 mRNA upstream 77936 19505862 ~ 19532003 (-) True fbxo11a
XM_043256074.1 mRNA upstream 252319 19680245 ~ 19685333 (-) True ntpcr
TU140311 other downstream 752670 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 752670 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 752670 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1705857 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1706384 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 440087 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 715670 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1051999 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1053517 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1060859 20488785 ~ 20492076 (-) True G95510

Expression Profile