RNA id: XR_006252294.1


Basic Information

Item Value
RNA id XR_006252294.1
length 1625
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC122356209
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20108191 ~ 20140958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTATTAAATGTACGTGTTGGTCACTGCTGCTGTTTCGTTTCTCTGTATGCAAAAGATCATTAATtatcagggttgccaggtctgctaattaaaagtaaaagcaaacCTCCCCCTCGATCCGCGGCGAGTGTCGAAGTAGCACGATTACGCGGGAAAACTACCTcgtgtttacaaaaaaagtcattggaACGTAACGTTAAAAAAAACCGCGTAGGGACGTTGCACGCTGACAAACCGGAAACGCCCGAGACGAACTACGCGTAAAGCGGAAGTAGATTTATTGATCCGAGCACGTTAGTTTTATGAATAATACTAATTATCAAGCAACGAATTCATGATTATTAAACCGAACGAGGATATAATCACTGGATTTGCTGACGTTTATCAGAGATCAAGATAAGCCACCGTCCTACACAAAAAGTGCATGTGGGTCGCATGAATAATGGATACGCGGCTTGAACTCCCGCTGAACTCCAGCTTTGTCAAGTGGAGATCTACAGCAAACCTGCACGCCCATTCCACATATCCTGCGCCGTGCTGATGTGGCCGTTCATTCATCCGTTCGGAGCGGCTGTCCCGGCTCTGGGTGCGGCCGATCGGCTGACACACTCAAACAAGctgttgcACATGTGGCACATCTGGCGCTCTGCCTGAATCATTACTTACTTTTTATGTTCGGCCCGGCCGTCGCCATGGAAACTGCTGCATGTTTGGCAGCGAGCCTTTGAAGGAGAGCGAGAGCAGCCGCGCGCAACAGAGAGGATTGCGAGCTCTCAGGAATTGGCCTACATCCAGTGTAATCATGGCGGGAGCTGAAATGAGGCTTTTGGCAGCACACCAGGTTTCAGAGAACAAAGATGTGAGCCACTAATGTTGGCTGCAGAGCCTGCTTGGCATCCTTTACCatttcccagcagcccctgccaCGGCTGCCTGCCAAGCCGCCCTCCCTCCCCCCCGTCCCTCCCCTGCTGGGACTGCAAAGAGGATCTGAATAAAGAAAGAGAGTTGTTTTTCTCCAGCTCCTCTGCTCCAATGACATCACCTCTGCAGCCTCCAGCCCCCAGATTCCAGACGCCCAGCACATTTCTTCTGCTCCTCTCTCCCAGGCCCTCCATTTTGACTAAATTCCTCCATTTTATAATTGCTCGACCTCCTCGATGTCACCAAATGTTTGCTGTTTGCCCAGACAAAGCCAGAATGCGCCGACGAGTATGTTTTTTTGGACACTATGTAATGCACACAGTTCGTAACAACAAGATAAATGTAGAATACCCAGAATTGGGATAATTCCGCAGTTCTCTTTcttcacatgtgtgtgtgtgtgtgtgtgtgtgtgtgcacatgcatatatttgtcaGCTATAACATGCATTTGTCAAATAACAATGTAGAATAGAAACGTGtagacaaagaaaataaaacttaatggTTAACTTGGAGTTAAAAGTGGCATGggagaggtttatcttcaatgttagattttctgtcacaccataggacacactGATACATCAACTatccacgcacacacacacacacacacacacacacacacacacacaatataagaAATTACTATTCAATTCTCGAAACaggcatatatgtatatgttttaacaGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141188 lncRNA downstream 32254 20075371 ~ 20075937 (-) True G95469
TU141149 lncRNA downstream 186551 19921002 ~ 19921640 (-) False LOC122357123
TU140781 lncRNA downstream 261657 19846301 ~ 19846534 (-) True G95190
XR_006252305.1 lncRNA downstream 272538 19818053 ~ 19835653 (-) True LOC122356282
TU140737 lncRNA downstream 437860 19669709 ~ 19670331 (-) True G95147
TU141230 lncRNA upstream 95720 20236678 ~ 20238227 (-) True G95506
TU141232 lncRNA upstream 123768 20264726 ~ 20275256 (-) False LOC122356211
TU141247 lncRNA upstream 373815 20514773 ~ 20515311 (-) True G95519
TU141256 lncRNA upstream 377642 20518600 ~ 20520093 (-) True G95524
TU141285 lncRNA upstream 479089 20620047 ~ 20620719 (-) True G95537
XM_043255693.1 mRNA downstream 4319 20101059 ~ 20103872 (-) True irf2bp2a
XM_043255837.1 mRNA downstream 71718 20025669 ~ 20036473 (-) True LOC122356780
XM_043255630.1 mRNA upstream 1591 20142549 ~ 20145468 (-) True tomm20a
XM_043255557.1 mRNA upstream 9500 20150458 ~ 20218900 (-) True arid4b
XM_043256232.1 mRNA upstream 104529 20245487 ~ 20264253 (-) False b3galnt2
XM_043256231.1 mRNA upstream 104529 20245487 ~ 20264250 (-) True b3galnt2
XM_043254718.1 mRNA upstream 123827 20264785 ~ 20275386 (-) False LOC122356211
XR_006252356.1 other downstream 201129 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1435298 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1435298 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1435298 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 2388485 17719634 ~ 17719706 (-) True trnav-aac_26
XR_006252430.1 other upstream 2638 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 338967 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 340485 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 347827 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 352684 20493642 ~ 20496864 (-) True G95511

Expression Profile