RNA id: TU141250


Basic Information

Item Value
RNA id TU141250
length 648
RNA type TUCP
GC content 0.53
exon number 4
gene id G95520
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20479925 ~ 20486704 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttaaaacatcaaaagccCCTGATAAATCTGTCCGTGAGAAATGAGATATTTAGGAGATCTCTCTGGGGATGTGTTCAGAAATGAAGCGTAGCTGAACGAGTCTCGCTGTGTTTCAGAGGTGCAGCGTCCGTGGACCCGTGTCGTGTGGGCACCCATGACTGTGACGCGTCCCGAGCGCGCTCGCTGCAGCTACACCGGAGCATCGTCCTACATCTGCAGCTGCCTGCCCGGCTTCATGGGAGACGGACGCAGCTGTCAGGACATAGATGAGTGTCAGGTGAATCAGTGTCATGACGATGCCGtctgcctcaacacacctggaTCTTTCACCTGTCAGTGTAACCCTGGTTTCTATGGCGATGGTTTCTCCTGCTCTACAGGTCCTGGTCACGATGTCCCTCGCCCGATTGGACCAACGCCCGATCCTAACGTGAATCCTTTGCCTCCTGGCAGTCATATCCTCTTCGTCCAGAGCGGGAAGATCGAGTATATTCCTCTGGAAGGTCACAAACTGAAGAAGAACCAAGCCAAGACTGTACTGCATCTCCCGGAGAAAGTGGTGATCGGAATTGCTTATGACTGCGTGGAAAGATGGTGTATTGGACGGACATCAGCACACCTGCCATTAGCAAAGCTAGTCTACAGG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141232 lncRNA downstream 204669 20264726 ~ 20275256 (-) False LOC122356211
TU141230 lncRNA downstream 241698 20236678 ~ 20238227 (-) True G95506
XR_006252294.1 lncRNA downstream 338967 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA downstream 339239 20114726 ~ 20140686 (-) False LOC122356209
TU141188 lncRNA downstream 403988 20075371 ~ 20075937 (-) True G95469
TU141247 lncRNA upstream 28069 20514773 ~ 20515311 (-) True G95519
TU141256 lncRNA upstream 31896 20518600 ~ 20520093 (-) True G95524
TU141285 lncRNA upstream 133343 20620047 ~ 20620719 (-) True G95537
TU141279 lncRNA upstream 134558 20621262 ~ 20623143 (-) True G95535
TU141282 lncRNA upstream 134558 20621262 ~ 20678269 (-) False G95535
XM_043254721.1 mRNA downstream 134243 20275777 ~ 20345682 (-) True lyst
XM_043254718.1 mRNA downstream 204539 20264785 ~ 20275386 (-) False LOC122356211
XM_043254719.1 mRNA downstream 204894 20264785 ~ 20275031 (-) True LOC122356211
XM_043254720.1 mRNA downstream 205236 20264785 ~ 20274689 (-) False LOC122356211
XM_043256232.1 mRNA downstream 215672 20245487 ~ 20264253 (-) False b3galnt2
XM_043254780.1 mRNA upstream 34943 20521647 ~ 20542635 (-) True eif2ak2
XM_043256110.1 mRNA upstream 56071 20542775 ~ 20546992 (-) True LOC122356970
XM_043255695.1 mRNA upstream 85616 20572320 ~ 20595986 (-) False mypn
XM_043255694.1 mRNA upstream 85616 20572320 ~ 20595986 (-) True mypn
XM_043255696.1 mRNA upstream 88874 20575578 ~ 20595989 (-) False mypn
XR_006252430.1 other downstream 336198 20143596 ~ 20143727 (-) True LOC122357145
XR_006252356.1 other downstream 572863 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1807032 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1807032 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1807032 18545581 ~ 18672893 (-) False LOC122356088
TU141235 other upstream 2081 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 6938 20493642 ~ 20496864 (-) True G95511
TU141260 other upstream 83334 20570038 ~ 20571562 (-) True G95526
TU141433 other upstream 520768 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 927096 21413800 ~ 21413871 (-) True trnag-gcc_70

Expression Profile