RNA id: TU141794


Basic Information

Item Value
RNA id TU141794
length 2093
RNA type TUCP
GC content 0.41
exon number 4
gene id tmem254
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22151742 ~ 22156859 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGATCTCTATAGCGACAGCCCGGCCGCCGAGAGGAGACTAGTGTAGTTAACTCTAGTTAGTTTGCTGTTTAGTTAGATTAGCCATCATGGCCAAAAGTGACGGCAGCTCGTACTTCAGGAGGTCCAGTGTGTTCTGGATGCTGGTCGTGGCGGGTTCTCTGAGCTTTTTCACGTGGACGGTGTTCTGGCCTCAGGACGTCCCCTACAGCAGTCTGGGTCCCCTCGGAGCTCTGGCCAAGCATTGTGTGGACTATCACTATCCTGTGATGTATTACGGATGGTTTCTGACGTGGCTCATCCATCTCTTCGAGGCTCTCTTTGCGCTGAAGATCTGCAGtGATAAAGGCATAGACAGCACCTCCACACGTTTCCTGTGGGTCGCTCAGACGTTCCTGTTTGGTTTCGCGTCTCTGGGTCTTCTGCTCAAATACAAACCGGGCGGCCGATCCAAACGCGAGTGACAGAAAGCGCAGCCTGACGCCGATCCCCCGCAGGACGCTGATCTTTATATTCCAGAGGATTTATCCACCAGCAGGTTATATTTGAACAGTCTCATCCACCTCACTGATTCGTTAAAGGCTAAATGTCACCCGAGGCCTGGTTTACACGATCCTGGTTCAGTGAAGCTCTATCAGCAGTATTAGTGACGTAACGTCTGTCAGAAAGTCACTTCAGCGCCGTGTGGGTACAGTCAGACTCTTACAGCGCAAAATAAGAGCAATAAACCTCTAATACACACTGGTATACAAATCCAGGAAACATGGTACACTTCACAGAGACATGGAGAAGAAGGTATTCATCTAAAGATTTGCTGATATAAACCAAACCTCCCGCTGTACAACAGAATCAGAGTCCTccatataaatgataatatttacttaaagtgctttaaaactattttcactcagaaactgcatAGATTAAACggctagaatttttttttgtatgaattgtaaacacattcatatttttcatacaGATAATTGTATCCAAAATTGAAAAGCATTATATTTTGAGAAACCTCGTCTCTATAATTGGTCTTTTGCATTAATAGTGTAACGGTGAGTAGATATATCTTATAATTGTGGGTACAATTATTCAAGAGgtcataaaatgcataattaatgcattcataattaatgtattataatatgcagtaatattttgtatcaaaaggttttaaataacGGTACTTTGTcctaaattgaaaataaaaataaaacaatacatttataaatttataaaaacaataaaaaataaatttttcactgtatgttttgctgtaataaaataatgaaattatattaaaattaaaatgagtcaAGCTTAGGCCCTGTGTCGAGAACAACTGagatacacttttattttttagtgaCTTACGAATGAGGAAGAATCAAAATCAAGAAAAGAGCCAGAACGAGTCTGCTTGGCCTAACTAGAACACGTTACTCCACGCATCTGGGTTTCTCATTATATAATAGAATAGAGAAAGCGTCTTACAGTCTGCTCCGTTCGTAGACGGTTCACAGCTCAAATATGAAGGATCTTTATACCAGGCCGCCGCTGGACGTGATGTTCCTCAGACGCTGCTGATGGAGCAGACACCTGAACGCAGAGTATTCCTCTGACCGTCTCTCTCAGCCGCTGCTGCTTCAGAAACACTTGTGTAAGTGCAGCTGGTTATTTTTAGTACAGCAGAGCGTTAGATTCCTCCAGACTTCTGTGTTTTGGCTGGAGTTCGTGTGATTATGacgtgtgtgtttagtgtgaaCGAAGGAAAATAAACCGCCTGATTTGACTTGCTTTGTGTCGTCTGTCACTCGATATACAATCATATCATAAAATACTGTCATACGGATATGAAGCTTCGTTTGTAGTTTTGACAGGAGCTCAGCGCTGGTTAGGATGCGGATGAATGAATCTGATTCGCTCTTCACACTGGATTCAATCACATGTGCTTTATTTAGAGCTGTGGTGTCCGACGTACTCATAATTCATACGGAGAGACATTTTTATGTTAGCATATTTATTGGACAATAATTacgcaatttattttatttgataaaaccAACAACATTACAGCAGAGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252426.1 lncRNA downstream 8970 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 15351 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 31300 22114696 ~ 22120442 (-) True G95902
TU141784 lncRNA downstream 111636 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 276813 21874513 ~ 21874929 (-) True G95899
TU141834 lncRNA upstream 17502 22174326 ~ 22244477 (-) True G95934
TU141833 lncRNA upstream 71360 22228184 ~ 22230539 (-) True G95933
TU141841 lncRNA upstream 91232 22248056 ~ 22370625 (-) False G95938
TU141836 lncRNA upstream 139517 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 146481 22303305 ~ 22303781 (-) True G95941
XM_043255712.1 mRNA downstream 100056 22041455 ~ 22051686 (-) True pwwp2b
XM_043254889.1 mRNA downstream 127132 21908358 ~ 22024610 (-) True LOC122356328
XM_043254705.1 mRNA downstream 284844 21847430 ~ 21866898 (-) True valopa
XM_043256061.1 mRNA downstream 828739 21269350 ~ 21323003 (-) False LOC122356942
XM_043254898.1 mRNA upstream 841 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA upstream 841 22157665 ~ 22183173 (-) True srfb
XM_043254790.1 mRNA upstream 28216 22185040 ~ 22227004 (-) True ptk7b
XM_043255446.1 mRNA upstream 74625 22231449 ~ 22250313 (-) False klc1b
XM_043255444.1 mRNA upstream 74625 22231449 ~ 22250313 (-) False klc1b
TU141816 other downstream 7772 22138329 ~ 22143970 (-) False LOC122357128
unassigned_transcript_1933 other downstream 498061 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 577421 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1931 other downstream 737871 21413800 ~ 21413871 (-) True trnag-gcc_70
TU141433 other downstream 971525 21007472 ~ 21180217 (-) True G95646
XR_006252351.1 other upstream 75990 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 79280 22236104 ~ 22238570 (-) True G95932
TU141837 other upstream 139517 22296341 ~ 22297227 (-) True G95936
TU141850 other upstream 169886 22326710 ~ 22329260 (-) False ypel5
TU141887 other upstream 214743 22371567 ~ 22438998 (-) True LOC122356262

Expression Profile