RNA id: TU141833


Basic Information

Item Value
RNA id TU141833
length 1173
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G95933
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22228184 ~ 22230539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatacagtcacacacacacacacttaaatacagtctcacacacacacacacacacacacacacacacacacacacacttaaatacagtcacacacacacacacacacacacacacacttaaatacagtctcacacacacacacttaaatagtctctcacacacacacacacacacacacacttaaatacagtctcacacacacacacacacacacacacacttaaatacagtcacacacacacacacacttaaatacagtctcacacacacacacttaaatagtctctcacacacacacacacacacacacttaaatacagtctcacacacacacacacacacacacacacactgtataatGTGCAGATCTCAGGTAATCTGTAGAAATGATAAAACTGGGTCATAATCTGTAAACGCTGCAAGACTTTGAATTCTGTTACAGTTAATCATATTATGTTACATCTCTGTTACGTATCTTTTATGTTACATCTCTGTTTctgtattaatgtaataatactCAATCATGGTATCAgggttttatatgttttttttgaggCAATGGGTTATTGCATAAATATAACGTGTACATCTTTTATTATATGAATCGTTGAATCCAAAATCCCTCTGATCCGTACAGGACCTCTCCTGACATATGAATGTGAATATGGATGATGGATTTTGTAGTGGtgtaaatattttggatgaTCCTCTCaggttgtaaatgtattttagaaaatgtaaaagaaacaCAGGACCCTGGTTTTATTACTGgacttttaatgtttaatggaTCTTAAAGATGATGTTAGTGATGCACATAAAACATACTCATTATTAATATCCGGTCATttctattttgttgttgttgttgtaaatggAGACCAAAGCTGTTATTAATCCACTGAGATGATGTCTGTGAGGAGGTTATGATTTTATCTGCAGTAAACCTTGTTGCCAttaatgctgtttatttctGCCCAAATGTGCTGAGAAAACTATATTTTCATGAGACTAATAAATTGTGCCAAGTTTTGACTACTCTGTCCaagattgtttgtttatttaaaaatgtgtcattgcaaaataaaagtcatttctgTGTCTGAATCAAAAGATCCACAAACCCGCTCCGAAGTTCTGgactgaatcaaatgattcggaTGAAGTCTGGC

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252426.1 lncRNA downstream 85412 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 91793 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 107742 22114696 ~ 22120442 (-) True G95902
TU141784 lncRNA downstream 188078 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 353255 21874513 ~ 21874929 (-) True G95899
TU141841 lncRNA upstream 17517 22248056 ~ 22370625 (-) False G95938
TU141836 lncRNA upstream 65802 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 72766 22303305 ~ 22303781 (-) True G95941
TU141840 lncRNA upstream 76529 22307068 ~ 22370625 (-) True G95938
TU141853 lncRNA upstream 83117 22313656 ~ 22483219 (-) True G95949
XM_043254790.1 mRNA downstream 1180 22185040 ~ 22227004 (-) True ptk7b
XM_043254898.1 mRNA downstream 45010 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA downstream 45011 22157665 ~ 22183173 (-) True srfb
XM_043256219.1 mRNA downstream 71340 22152035 ~ 22156844 (-) False tmem254
XM_043255712.1 mRNA downstream 176498 22041455 ~ 22051686 (-) True pwwp2b
XM_043255446.1 mRNA upstream 910 22231449 ~ 22250313 (-) False klc1b
XM_043255444.1 mRNA upstream 910 22231449 ~ 22250313 (-) False klc1b
XM_043255445.1 mRNA upstream 910 22231449 ~ 22250313 (-) False klc1b
XM_043255443.1 mRNA upstream 910 22231449 ~ 22250313 (-) False klc1b
XM_043255450.1 mRNA upstream 3253 22233792 ~ 22250313 (-) False klc1b
TU141795 other downstream 71325 22151742 ~ 22156859 (-) True tmem254
TU141794 other downstream 71360 22151742 ~ 22156824 (-) False tmem254
TU141816 other downstream 84214 22138329 ~ 22143970 (-) False LOC122357128
unassigned_transcript_1933 other downstream 574503 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 653863 21574251 ~ 21574321 (-) True trnag-gcc_71
XR_006252351.1 other upstream 2275 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 5565 22236104 ~ 22238570 (-) True G95932
TU141837 other upstream 65802 22296341 ~ 22297227 (-) True G95936
TU141850 other upstream 96171 22326710 ~ 22329260 (-) False ypel5
TU141887 other upstream 141028 22371567 ~ 22438998 (-) True LOC122356262

Expression Profile