RNA id: XM_043254536.1


Basic Information

Item Value
RNA id XM_043254536.1
length 2457
RNA type mRNA
GC content 0.42
exon number 15
gene id si:ch211-130h14.4
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23429646 ~ 23444063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGCCTAAGTGTTGATTTTATTACCATTCCAATTCTAGTTATTCTATAGTTCTATATATCTTCAAAACAtataatgaatatgaaaataaaacaaaagacataaaaagCTAGCAAACATTTTGTTATGTGAGCAACAGCCTTAAACGGGGAgattttatgaatattaatgtaagCAGAAAAACTTGAAGCACACCGCGCTACAATGAACAAAGTGAAATGAATGGGCTATAAGCTATGAAAAGGACAGGGGTTGTGAAGCTCGCACCATGGCAACGACCCCTTAAACACAGGTCGGGTCTGAAACTCGTCGCGCTTCGCTTTGAGCTCTTTCTGCGGAGTAGCTGTGTggataaattttaaaaaatctgaaaaatactCTGAAAATTGCTAATTCGTGATGTTTGGAAACTGCACCGGTTATAACAAATGCACGTAGAACAGTTAGCACACTGCTGTGTGTAGTTAGCTGTTAGAAAAGCTGTTCACTTGTGAGACGGTTGTTCAAATTCAAAGAGGCTTAGAGATGTATTAGTTTGGTTAAGCACATAATATCAAAAGCTTCAATAACCGCTTCACTGGCTTAAATATGACAATGAAAAATGAAGATATGTATCATATCAGTTCACTGCCGCCGATCCTGGACTCTTACAAATCAGTGCAATTTCCAGAAAAGACACAATCAAGCCACACATCTCTGGATCTATGTGATTTTCCTCTACGGGGGAGGCCTGCTGCATGTCTTCAAAGTGACTGCAATCATCTCACAACATCTCTGAACCTCATGAAATCCTTTTCTTTTGTGTCCACATCTTCATCCACGGAAAAGGCAAAGTACAAACGGACAACTTTAGTATTGGTCTCCCTGGTTACAGCTAGCAACACGGTCCCCAGGCAGCCGGTCCGTCTGAATGTCAGAGGCAGGGGAGACGACAAAGCCCCAGCAGAACAGGGCCGATGGCAGCGACTTCTGCTCATGCTGGGGATTCTGATCAAGCGCttgagaggaaaagaaaagctCTTCTAGATCAGCGCCATCTAGAGACGTACTACAGACTACAACGCTTAAGAGAAGTGCTGTCATATCAGCGTGCTGCATTACTGACGGAAAAAGTTCAAAGACAGAGACAAGAGATGAAGCTCCACGATTCCAGACCTAGAGAAGGACATAGAGAACAGAAGCTTGTCAGCCTTCAGAGGGCCACCAGATCAACCCTCACACACGATGATGAATACCTGAGGTGTCTGCCTAAAACACGCTACTATCTGGTTCTGGAACTGCAGAAACAGCTAAAACGACTCGGGTGTCTTCAGAGCCGCAGGGAACAGGAGGTGTTCAGGGTCTGGGCAGAACAACAAAGTAGCACATGTCAACTTGAGAAACAACTACAAGCAGTGGAACACAGCATTAATTCCAGCTCAAATGTGACTCTTGAGGATCTGCTGAAACAGAGGTCTGGGTCTCTCCCAAAACTTCAGATCAAACCTGGTGACTCCacagcacaacacacacatATGCCAGTCTCAGTAAAAGTAGGTGGAGGAGGGGTGAACGCTTTCCAACAGCAGGGCAAACAGAGTTGGGGACAAGATGAAACTGAGCTCATGTTTCCTGAGGTTTTCACTCGAGAGGTCAAAGCGCCTACATTTTCTAGTATGAAGTCCACCTTCTTGGAAGAAGTCAGCTCCAAGATGCTTCTCACGaGAAGCAATAAGCCACCGATCGGGTCAAAGACCTTTGACATTAAACACAAATTGAGATTAATGCACAACCTTTCACTCTCTCATATGGCTGATACTCAGAGAATTATGGCAAAACGTGTACTAAGTCTGCAGCTTACAGATGGTTTCAGCATTAAAGAATTGATGGAGCATGAATGTCGTCGCAACATCCAAACTCAGATATCCAGATGTACCACAGAGCCGGACTTTACACAGCAGAGTGATAAGGATACATCTGAGAGCCCAAAATATTTCACTGAGAGTCCAAATACACATTTCTCACCAAGTCTCCATCCAGTTGGGAAAAACACAGATGAGACTCCAAATAGTTCTGCTGGAGATATGTGTTTATCGTACACAGACGTGCCTCTATGCATTGCTGACGCCTACACTATCCCTGCTGTTAAGGTGGAAAACTCTGACGTTAAGATGTGGACGAATTATGCATAGAGGACGACTGCTGATCTGTcgctttaaaacaaatcaaagattAATTCATTTGATGAAGAGGAGAGAAGCTAGAAACGCTCTGCtcaacacacaaatgcatgtttgCCACATTGCTTGATTTAAGGATAGCTGTTAAAATATTCTAGCTTTTATAGCTTccacatttattacaataagctgcatttgtgctgttttaatcatttaatgttAAAGACGTATCTGAAGCCTGTTTTAATTCGTTACCCAGTACACATATTTTGGTattcaaatgcttttaaaattaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142128 lncRNA downstream 251550 23176802 ~ 23178096 (-) True G96117
TU142099 lncRNA downstream 275151 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 275151 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 399746 23017198 ~ 23029900 (-) True G96061
TU142018 lncRNA downstream 422183 23006279 ~ 23007463 (-) True G96060
TU142295 lncRNA upstream 94715 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 483268 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 598465 24042528 ~ 24067735 (-) True G96279
TU142347 lncRNA upstream 626097 24070160 ~ 24070488 (-) True G96286
TU142361 lncRNA upstream 663370 24107433 ~ 24107818 (-) True G96295
XM_043256098.1 mRNA downstream 582 23425032 ~ 23429064 (-) False tbxtb
XM_043256097.1 mRNA downstream 582 23425032 ~ 23429064 (-) True tbxtb
XM_043255476.1 mRNA downstream 13407 23332820 ~ 23416239 (-) False pde10a
XM_043254537.1 mRNA upstream 116 23444179 ~ 23446166 (-) True prr18
XM_043255790.1 mRNA upstream 3270 23447333 ~ 23464851 (-) True sft2d1
XM_043255791.1 mRNA upstream 3270 23447333 ~ 23464812 (-) False sft2d1
XM_043256259.1 mRNA upstream 21726 23465789 ~ 23505692 (-) True rps6ka2
XM_043254854.1 mRNA upstream 69752 23513815 ~ 23519654 (-) False rnaset2
TU142010 other downstream 434047 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 606387 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 607132 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 986360 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 826251 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 898798 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 955060 24399123 ~ 24403644 (-) False fgf8a

Expression Profile