RNA id: TU142361


Basic Information

Item Value
RNA id TU142361
length 386
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G96295
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24107433 ~ 24107818 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acccgtgtgtttctggatgcggttgttacctggtgttaggtgatggtcacaatcgttgcctcgtgtgcctgggctgagcatgctgaggtggcggttgtggatgaatcatttcctcgcggggagatggtcatctcggagtgatgggcgggctctgtcgccttgaaaaaaggaggcggagcttgtgtttgctcgacttggttctcattctggctgcagacaggtgggctccatttcgttgtgacacaaagcttaaactctgcaaccagtggagctgcaaaaggggcagtctggaccctcacgtggggtatcagctgtaccctcttgggctccccctgatgatcagaagtcaatcgctgcatcggaaggtgagccagacatttctggaa

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142347 lncRNA downstream 36945 24070160 ~ 24070488 (-) True G96286
TU142336 lncRNA downstream 39698 24042528 ~ 24067735 (-) True G96279
TU142315 lncRNA downstream 179373 23927331 ~ 23928060 (-) True G96265
TU142295 lncRNA downstream 565133 23538778 ~ 23542300 (-) True G96254
TU142211 lncRNA downstream 663650 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142369 lncRNA upstream 142615 24250433 ~ 24250755 (-) True G96301
TU142371 lncRNA upstream 156850 24264668 ~ 24264917 (-) True G96303
TU142446 lncRNA upstream 166877 24274695 ~ 24282617 (-) True G96329
TU142461 lncRNA upstream 234931 24342749 ~ 24344630 (-) True borcs7
TU142460 lncRNA upstream 235043 24342861 ~ 24344630 (-) False borcs7
XM_043255748.1 mRNA downstream 49529 24043636 ~ 24057904 (-) True angpt2a
XM_043255964.1 mRNA downstream 111840 23633716 ~ 23995593 (-) True csmd1a
XM_043254854.1 mRNA downstream 587779 23513815 ~ 23519654 (-) False rnaset2
XM_043254672.1 mRNA upstream 191117 24298935 ~ 24302415 (-) True LOC122356174
XM_043254701.1 mRNA upstream 203209 24311027 ~ 24313946 (-) True inaa
XM_043255979.1 mRNA upstream 220047 24327865 ~ 24341452 (-) False cnnm2a
XM_043255978.1 mRNA upstream 220047 24327865 ~ 24341447 (-) True cnnm2a
XM_043255981.1 mRNA upstream 235042 24342860 ~ 24344657 (-) False borcs7
TU142010 other downstream 1111834 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 1284174 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 1284919 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 1664147 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 162496 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 235043 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 291305 24399123 ~ 24403644 (-) False fgf8a

Expression Profile