RNA id: XM_043254715.1


Basic Information

Item Value
RNA id XM_043254715.1
length 2008
RNA type mRNA
GC content 0.43
exon number 5
gene id fgf8a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24399123 ~ 24404715 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGCGGGTTGACATTGGAGACTGACTGGCAAtgggagaagaggaggggatAAGAGAGTCCAGCAGCACCGCTTCTTGAAGAAAGCTCATCAGATGCACTGTCCTGCCTCCTCTGACTGACATTCACGCAGGAGTCAGACTGGATCAAACGTCAAAGGATCTATTTCTGCCGCGCTCCTCGGCTTCATGGACAGCACGGGACTCGAGTCCGAATGATCAGGCGCATCGGAAGCTCTTTCGCTAAAACTTGAAAAGTAAACCGTTTACATGCTGCGAGTTTTGCGTTAAGTGCACTTATTTGTCATTCTCGTTCTTATGAAGGAAATCCAGTCGGTGCTTGTACTTGTCACCGGTGTCAGTCTGAAAAAAAATCCTGGACATTTTTTCTGCCTCTGAGCAGCAGATCTCGTAATTTGCCAGTTGATCTGTTCATCATATGTTGCGAGTCACAGTTTGGATACCAGTGCTGGACTTTATACATTTCAACTGGAAAACctgaattttgttttttaaatctgcaaattacacattttttttttcctgaggcCCTTCCATTCCTGCAACATGAGGCTCGTACCGTCACGATTGAGTTATCTATTTCTTCACCTCTTTGCGTTTTGCTACTATGCTCAGGTAACCATTCAGTCCCCGCCTAATTTTACACAGCATGTGAGTGAGCAAAGTAAGGTGACGGACCGGGTCAGCCGTAGACTAATCCGGACCTACCAGCTTTACAGTCGAACCAGTGGCAAGCACGTGCAAGTTCTGGCCAACAAGAAAATCAACGCGATGGCCGAGGACGGTGACGCTCATGCCAAACTCATAGTGGAGACGGACACATTTGGGAGTCGAGTTCGAATTAAAGGAGCTGAAACGGGATTCTACATCTGTATGAACAGAAGAGGGAAACTGATTGGCAAGAAAAACGGTCTGGGGAAAGACTGCATCTTCACAGAGATAGTCCTGGAGAACAACTACACAGCTCTACAGAATGTGAAGTATGAAGGCTGGTACATGGCCTTCACACGCAAAGGCAGACCCCGCAAGGGCTCCAAAACCAGGCAACACCAGCGGGAAGTCCACTTCATGAAGAGGCTGCCCAAGGGACACCAAATCGCAGAGCACAGACCCTTTGATTTCATCAACTACCCTTTCAACAGACGGACTAAACGCACCCGCTACTCAGGAGAGCGTTGAAGAGTGAAGCTGGAGAAAAGGAGaggacagagagcgagagacattCTCAAACAATGAACAGACTCCTCTTGTGGACTcctacaaacattttttgtactGAGCAACAATATACCTAACCTTtagttttttatgaattttcagaaatagcaaaaaaaaagaaaaaaaaaacatctcgagaaaaaaaaagagatctaTTTTTGTACCCCTGACTTTTAGTACTGACCTGTGTAAGAGTATAGAAATGAAAGCACGGGACGTGTAAGTGCTGACATTTTAGTAGTACGTGGACTTCATCCGTCTATCCTCTCTTGATCTGCtttggttttatttgatttcaatGGTTTCAGAGTAATTTATAACTCTTCGTATTGCTGCTCAAGGGGACTTGAAGGGCCTGAGAGAATGCACTGACAACACAAGGCTGTATTCGGTTACACAGGCAGCCAGGGCACCTCTCGACCACCCAGCGATAAGATACCCAGCTCATCTCTCAGTAACCTCTCTGGTTCTTGATTCTGGAACTCTCTGGAGATAAACACGGTTAAAGCAAACAGAgctttaaatacatatttaaatgtggcagctacatttttttattatcgcAGGTTTCCTACTGtgatttaaactgtaaatttCCAAGGTGTATAAATGCATTGTACGGACTGTAGGAAAagctttttgttctttgttgcattttgtttgtctgtttttttatacaaatataaatatatttttatttgaggatgtgtaaaataattttaatgatggaaatatttatttaaaaacctgtAATAAATTTACCTTAGGATA

Function

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process
GO:0046850 regulation of bone remodeling biological_process
GO:0001756 somitogenesis biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0021588 cerebellum formation biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055012 ventricular cardiac muscle cell differentiation biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0061195 taste bud formation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0043049 otic placode formation biological_process
GO:0051216 cartilage development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0003208 cardiac ventricle morphogenesis biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0021703 locus ceruleus development biological_process
GO:0048665 neuron fate specification biological_process
GO:0060271 cilium assembly biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0030878 thyroid gland development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0060037 pharyngeal system development biological_process
GO:0030903 notochord development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142461 lncRNA downstream 54496 24342749 ~ 24344630 (-) True borcs7
TU142460 lncRNA downstream 54496 24342861 ~ 24344630 (-) False borcs7
TU142446 lncRNA downstream 116509 24274695 ~ 24282617 (-) True G96329
TU142371 lncRNA downstream 134209 24264668 ~ 24264917 (-) True G96303
TU142369 lncRNA downstream 148371 24250433 ~ 24250755 (-) True G96301
TU142546 lncRNA upstream 201415 24606130 ~ 24606376 (-) True G96411
TU142551 lncRNA upstream 225838 24630553 ~ 24674087 (-) True G96415
TU142552 lncRNA upstream 226710 24631425 ~ 24675946 (-) False G96415
XR_006252418.1 lncRNA upstream 248212 24652927 ~ 24664925 (-) True LOC122357044
TU142568 lncRNA upstream 250066 24654781 ~ 24664886 (-) False LOC122357044
XM_043255809.1 mRNA downstream 5239 24367927 ~ 24393887 (-) True fbxw4
XM_043255382.1 mRNA downstream 37830 24350847 ~ 24361296 (-) False wbp1la
XM_043255383.1 mRNA downstream 40885 24350847 ~ 24358241 (-) True wbp1la
XM_043255981.1 mRNA downstream 54469 24342860 ~ 24344657 (-) False borcs7
XM_043255980.1 mRNA downstream 54469 24342860 ~ 24344657 (-) False borcs7
XM_043255913.1 mRNA upstream 25305 24430020 ~ 24441333 (-) True slc2a15a
XM_043254739.1 mRNA upstream 198973 24603688 ~ 24620433 (-) True b3gat2
XM_043254555.1 mRNA upstream 262590 24667305 ~ 24672334 (-) False asrgl1
XM_043254554.1 mRNA upstream 262590 24667305 ~ 24672195 (-) True asrgl1
XM_043254579.1 mRNA upstream 437555 24842270 ~ 24845635 (-) True cgasa
TU142459 other downstream 54496 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 128677 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1403527 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 1575867 22821981 ~ 22823259 (-) True G96036

Expression Profile