RNA id: XM_043254579.1


Basic Information

Item Value
RNA id XM_043254579.1
length 2222
RNA type mRNA
GC content 0.43
exon number 5
gene id cgasa
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24842270 ~ 24845635 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCCTGATGTCACACTTCTCAATAACAGAAACCTTCCTTTAAATGCACAACCGCGCGCGTCGCAGCTCATACACCAGCCATCATGAACAAGCAGAGGAGACCGGGCAGCTTCCGCGAGACAACCCCTGGCCGACCCAAAGCCAAAGCTCAAACAAAAGCAACTGCAAATGGCAGGAGCAAAGAGCAGAGAGATCACCGTGAGACTGGCACGGAGGAAAAGTCTCCTGAGTGCGCAGGGGCCAAGTGCACGGCAAAACGGGGGGGCAGGAAGCAACAGagtaaaaaagagaaagatcCTCATGGGTGTGAAAGTGAAGACAAACCACTTGAAGAACCGGCACTCAAACGGGGAAACATTAATCGACAGAGCAAAAAGCAGTCTCCGGAGACCTCCAAAGTTAAGTACGAAGAAAACGGCGCTTCTGTTATCAATAACGCAAACAACGCTGACGAGAATGACAGACAAGACGGGAGGAAGAAATTAGACCGTGAAAGTAAATGCAAACCAAGGCAGAGCGCAAACAGCAAAGCAGATGAAAAAACAGCACCAAGACGTAGTGGGAAAAAGAAGATAGGTCCTTTAAACATCGACAAAGATGAATCTCCGGAGAGGCCCGAAAGATCGGAAGAAAAGTCCAGAGCAAAACCTAGAAGGCAGCATGAATCTGATATCAAAGCAGCGGTTTGCGCGCTCAGCCCGGGTCGAAGAAAGAAAAGCGCGGGACACAACGCGACGACAGTTCACGAGCCACTGGGAAAGCTTCTTAGAGCAACTCTCGACAAATTAAAGATCAAGAAGATCGAGCAGTCTATTGCGTCCAGTTGTGTTAATGACATAATGGATACAGTGATTGGATACCTGAAACGAAACACGACCTGGTGTGAAGAGATCGAGAGATTACGGACTGGAAGTTATTATGAAAACGTTAAAATTTGTGAGCCGGATGAATTCGACGTGATGCTCACTATTCCCGTGGAGCGAGTGGACATTCAGGAGTTTGATGAGGCCGGAGCATTTTATAGCATCGCATTGAAACGACATCCCAAAAGACATCCTCTGGACAAATTCCTAAACGAAGACAAGACCATTCAGGCCAGCGAAATGCTTGGTGAATTCAGAGACGCCGTCAAGAAGGCTGTGGAGAAACTCCCATACCAAATTGACATGCAGCGAAAAAAGCCTAAGTGCCCTGCAGTGACACTGGAAGTAAAAATGGAAGGAAACAAAAAGACCATTTCTGTAGACTTCGTTCTTGGTCTTAAGGTTCATCGTGCAAGCTGGCCAGACTTTACAAAAGATGGcttcaaaatagaaaactggCTTGGTAAAAAGGAGAGAGCTAAAATGAAACAACAACCATTCTACCTGGTGCCTAAATATGAGGGAAAAGGAAACGCAGAGCATGATGGAGTTGTTGCAAAAGATGCCTGGCGAATTTCCTTTTCACATGTTGAAAAAGAAATTCTGAATAAGCATGGCCACTCCAAGACATGCTGTGAAAACGTTAAACAGAAATGTTGCCGGAAGGAGTGTCTAAAGCTCCTGAAGTATCTTCTTCAACAGCTCAAAGAGGATGACAAATCTAACAAGATGTCCAGCTTCTGCTCTTATCATGCAAAGACCACCCTTCTCCACGCTTGCGCTACAAGAGGAACCGACGACAAGTGGGAATACAGTCAGCTGGCCGACTGTTACCTGCAGCTTTTAGAAGACTTTGCGAAACATCTGAGAAATCGTCTTCTCCCCAACTTTTTCATTCCAACTCATAATCTCTTACATCAAGTCTCTCAGAGTAGCTGTGATTACCTGGCAAATGAAATTGAATTTCAGTGCAATAACAACTTTCCTATATTCAGAAAATGATTGTATTTCTGCATGTTTTGTTCTTTCAATTTAATAGTCAACTGTTGCTTAATAACATTCACTAATATGTATATTCCAAATAGTTTTATAGGCTTTTATTTGATATGCATTCAGCTGAACAAGACTGTTACATCATCTACACAACTGGAGGCATTTTAACCTCACATCAATGTaggataacaataataaaaaaaaacaacaaaaacactgaactggaggggaaaaaaatcctattaaagaaatatatcatGCACAcaaaatgaatcagtgtttctTAAACGTAAAACTTAACTGGTCAGTTACAAGGGCTTCACGGGTACTCCACAAAAGAGAGGATCAACACTTAAAAAGCTTATG

Function

GO: NA

KEGG:

id description
K17834 MB21D1; cyclic GMP-AMP synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142582 lncRNA downstream 125308 24714219 ~ 24716962 (-) True G96436
TU142578 lncRNA downstream 128812 24710744 ~ 24713458 (-) True G96435
TU142552 lncRNA downstream 166324 24631425 ~ 24675946 (-) False G96415
TU142551 lncRNA downstream 168183 24630553 ~ 24674087 (-) True G96415
XR_006252418.1 lncRNA downstream 177345 24652927 ~ 24664925 (-) True LOC122357044
XM_043254555.1 mRNA downstream 169936 24667305 ~ 24672334 (-) False asrgl1
XM_043254554.1 mRNA downstream 170075 24667305 ~ 24672195 (-) True asrgl1
XM_043254739.1 mRNA downstream 221837 24603688 ~ 24620433 (-) True b3gat2
XM_043255913.1 mRNA downstream 400937 24430020 ~ 24441333 (-) True slc2a15a
XM_043254715.1 mRNA downstream 437555 24399126 ~ 24404715 (-) True fgf8a
XM_043255511.1 mRNA upstream 814 24846449 ~ 24851300 (-) True eef1a1a
XM_043255512.1 mRNA upstream 814 24846449 ~ 24851238 (-) False eef1a1a
XM_043255513.1 mRNA upstream 814 24846449 ~ 24851217 (-) False eef1a1a
XM_043255516.1 mRNA upstream 5768 24851403 ~ 24856234 (-) False slc17a5
XM_043255515.1 mRNA upstream 5768 24851403 ~ 24856234 (-) True slc17a5
TU142467 other downstream 438626 24399123 ~ 24403644 (-) False fgf8a
TU142459 other downstream 497640 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 571821 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1846671 22994663 ~ 22995599 (-) True G96053
TU141977 other downstream 2019756 22821981 ~ 22822514 (-) False G96036

Expression Profile