RNA id: XM_043254701.1


Basic Information

Item Value
RNA id XM_043254701.1
length 1910
RNA type mRNA
GC content 0.49
exon number 4
gene id inaa
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24311027 ~ 24313946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATGGGACAGTCCGCCGGGTATATAATCACAAGCACACCCATTTTAGACTCCTTTAGTTGTGACGAAGATGAGCTACGGATCAGACAACTACATGTCCTCATCCTATAGAAAGATATTCGGGAAACCCCTCGTTTCACCGGCTCCACCTCTAGGACGAGCAATGTCTCCTCGAGGAGCTCCATGTCTTCCAGCGGCTTCAGGTCCCACTCTCTCCGCAGCAGCGCCTCCGGCGGGCTACTACAAGAGATCGGGCCGGTCATCGTCCTTCTCGCCGGTGCATTTCGACAGCGTGGATTTCTCCCAAACGGCCGTGTTGAACAACGAGTTTAAAATCGTGCGCACCAACGAAAAGGAGCAACTGCAGGGTCTCAACGACCGTTTCGCGATGTTTATCGAGAAGGTGCGCAATCTGGAGCAGCACAATAAAGTGCTGGAGACTGAACTGGTGAGTCTGCGCCAGAGGCAGAACGAGCCGTCCAGGCTGGCTGACCTCTACCAGCAGGAGATCCGGGACCTGCGAGCCCAGGTGGACGAGCTGAACAATGAAAAATCACACATTCTCATCGAGCGAGACAATATCGAGGAGGACTTGCAGAAACTTCGGGGCAAGTTTGAGGATGAGATCCGAGTGCGCGAGGAGGCAGAGCAGACGCTCAGGTCCTACAAGAAAGACGTGGACGATGCCACCATGGTGCGCGTGGACCTGGAGAGAAAGGTCGAGTCCCTCTTAGACGAGATCAACTTTCTGAGGAAAGTGCATGACGAGGAGGTGGCGGAGTTGACCGGCATGATCCAGGCGGCGCAGATATCCGTGGAAGTGGAGTTGTCCAAACCGGATCTGACCTCGGCCCTCAAAGAGATCCGTGGGCAGTACGAAACCCTCGCGTCCAAGAACCTGCAGTCGGCCGAGGAATGGTACAAATCAAAGTTCGCCAGCCTCAACGAGCAGGCCACCAGGACCAACGAGGCCATGAGAGCCACAAGAGAGGAGATCAGCGACTACAGGAGACAACTGCAGTCCAAGACTATTGAGATCGAGACCTTGCGAGGCACAAACGAGTCACTCGAGCGACAGATCCGCGAGATGGAAGATACACACAATGCCGAGGTCGCAGGTTATCAGGAAACAATCGGGCAGCTGGACATTGATCTAAGAAATACCAAGAGTGAAATGGCCCGTCACCTCCGGGAGTATCAGGATCTTCTGAACGTCAAGATGGCATTAGACATTGAAATTGCAGCATACAGAAAGCTACTAGAAGGCGAAGAAACCCACTTCAGTTCTGGGGTGACATTCTCCAGTGCCCCCAGCATCACTTACGGGTATCAGAGCCGCTCCGCTTTCACCTCAACCCGcaatcccaaaaaaaaagagaaagaagaagagggACACGGCAAATCCAAGGCAGGAGACAAGCGGGAGGAAAACACGGCAGAAACCGCTGTGATTAAGAAAGCAGAGAAGAGCGATAATGTTGATGTTAACTCAAATTAGAAAGTTACGGTTATTAAACCAACGCTTCTCTAGATAAGCGGTCTTTGGGGCGTTTGACAGTAATCACTATTAGATCAAATCTGCCAGTTGTTGTTTATAGTCATCGGTGACGTGTTTAAGATATTGTAATTGTGATATCTTGTTTCAAATACTATAGCTGCAATATGCTGGCTTAATATTTCAGAACTTAGGCCTCAAATATTTCCTGTGTTTCTAAATTGTATTTCAGTCCTGTTCATGGAGTATAAATATGAACTTATTATATTAGCCAGCATTAGCACTGATTCAGTGATTATggatatattcatatttaggAAAGGAAAGAACTCTGGCATATTACGAATAAGGGACCAAACTGCTGAATTAACTGTAACACATGTATGCCTTAACTATAATAAAGTCAATAACTGAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142446 lncRNA downstream 28410 24274695 ~ 24282617 (-) True G96329
TU142371 lncRNA downstream 46110 24264668 ~ 24264917 (-) True G96303
TU142369 lncRNA downstream 60272 24250433 ~ 24250755 (-) True G96301
TU142361 lncRNA downstream 203209 24107433 ~ 24107818 (-) True G96295
TU142347 lncRNA downstream 240539 24070160 ~ 24070488 (-) True G96286
TU142461 lncRNA upstream 28803 24342749 ~ 24344630 (-) True borcs7
TU142460 lncRNA upstream 28915 24342861 ~ 24344630 (-) False borcs7
TU142546 lncRNA upstream 292184 24606130 ~ 24606376 (-) True G96411
TU142551 lncRNA upstream 316607 24630553 ~ 24674087 (-) True G96415
TU142552 lncRNA upstream 317479 24631425 ~ 24675946 (-) False G96415
XM_043254672.1 mRNA downstream 8612 24298935 ~ 24302415 (-) True LOC122356174
XM_043255748.1 mRNA downstream 253123 24043636 ~ 24057904 (-) True angpt2a
XM_043255964.1 mRNA downstream 315434 23633716 ~ 23995593 (-) True csmd1a
XM_043254854.1 mRNA downstream 791373 23513815 ~ 23519654 (-) False rnaset2
XM_043255979.1 mRNA upstream 13919 24327865 ~ 24341452 (-) False cnnm2a
XM_043255978.1 mRNA upstream 13919 24327865 ~ 24341447 (-) True cnnm2a
XM_043255981.1 mRNA upstream 28914 24342860 ~ 24344657 (-) False borcs7
XM_043255980.1 mRNA upstream 28914 24342860 ~ 24344657 (-) False borcs7
XM_043255382.1 mRNA upstream 36901 24350847 ~ 24361296 (-) False wbp1la
XR_006252429.1 other downstream 40578 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1315428 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 1487768 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 1488513 22821981 ~ 22822514 (-) False G96036
TU141894 other downstream 1888158 22420936 ~ 22422869 (-) True G95972
TU142459 other upstream 28915 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 85177 24399123 ~ 24403644 (-) False fgf8a

Expression Profile