RNA id: XM_043254782.1


Basic Information

Item Value
RNA id XM_043254782.1
length 5655
RNA type mRNA
GC content 0.55
exon number 30
gene id LOC122356249
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20955467 ~ 20997713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacaatagtttcctgtaaggagcagaacaataacacatagtCTGTACTTAATGTGAAACAGTACACTTGACTTATTTGTAAGGATTTACGACAGGCAGGCGCCCTTTCGCTATCTTAGTTGCTTTAAAGAGCTCACAGAGACGCGTTATGGCAGATATTTTAAGGGAACGCGTTCATGACGCATACGCGCGTCACGATGACGAGCAAATATAAAGATTAACGCGTCTGCGCGCGGCGGACCGAAGGCGGAGGTTCCTGCGCGCGCCTGCCGTTGCCATGACAGCACAGTTAGTAAACTCCCCCGTTACCGCGCTGCAGCAGGGCGCGTGACGCTCCGTGACGCGTCGCGCGCGCTGCTCGTGCGGACCGACCGAGAGGATCAGAGGAACCGAGCCGCGGCGCGATGGGAACCTTCCGGAGCGCGGAGCTCTGTCtggatgaggaagaggaagaggagaaaaaGCGCCGGGAAGTTGAGCGTCTTCCTCCTCTGCTCGAGGACGAGgaGAACGTGTCTCTGGCTGACGTTGTGTGTCTGCGGGACGGTGGGCGCTCGGAGCAGGAGCTGTGGGcggtgtgtgtggagtgtgttcGTTCTCTCCAGAGCGTCGCCCTCTCGCCGCTCTTTCACACCCTCTGCGTGACGCCCGATACGCTGGCCTTCAACGCTCACGGTAATGTGTGCTTCATGGAGCAGCTCAGCgacGATCCCGAAGGCTGTTTCGTTCCTCCAGAGCTGGATAAGACCGGAAGCACGTTTgagggtcACATGTTCTCATTAGGCTCCACCCTGTGGGCGGCGCTGGACTCTGTGGAGGCGGAGCTGAGTGAAGAGAGCAGGTGTTTTCTGAAGCAGATGCAGCGAGAGAAAGCTGAAGATCGACCAGGACTCCAGGACGTTCTCTCTCGGGCGGAGGCTGTGCTCGGAGACGTCTCGTCCGCATCCGTCTGCCGCAAGCTGTCTGCCATCGGCCGAAGAGTCCTGTCCATCGAGTCCATCGCTGCTCTGCAAGATGGATGGGAGAGATCCGATCTTCAGTTTATGGATCACAAGGCCTGGAGATCAAACTCCACGGAGAATCCCGCCGGCGATCGCAGCATGATTCGAAACTACTCTGCTGATTCGTACGACGGCGAGGATCTGCTGCTGAGACGCAGGGGTCAGCTCTGTAACGGCTCCCCGTGGTCCGGAGGTTCGGACAGCAGGTCTCAGAACAGTTCTCCGGTACACAGGAGGAGTCAGGAGAGGAGGCCCGGGAGAGCCGGGAGAGCCCTGAACCGTTCCTGCTCGGTGCCGGACTCCAACAACCCCCCGGCCCTCAGCCCGCCGTCCCACGCTCCCATCAGCACGATGATGGCCGACCTGTCCGACATCACGGAGGAGGAGAGCTGGAGCGGCAGACTGAGACGGCCCAGAGCCAGGGAGGACCAGGACTCCACGGCTGAACCCGACGCATGCGAGACGGACCAGAGCCAAGCTGTAGACACGAACCAGTACAAATCCAACCACTTCAACAAAACTGTGCTGTGCCTGAATGAGGAATCTCACAATCAGTGGATCTCTTTGCGCGAGCTGCTCTCGTGTTCTGGTCAGCCGTTCTCGGTCAGTGAGCTCTGGGCTTTATGCTACACGTGTCTCTCCACGCTACAGACATATATCGACCTCCCAGACTATCTGTGTCTGGACTCTGTGTACGTGGGACGTGAAGGAGAGATGCTGTTTCTGAGACCCAAAAACTCAGCCTCCTGCGATGCATTTTTCCTGGCTCCTGAGTTTCAGGAACACGGGATCGTGACGGAAAAGGTTTGTCGCTGTCTAGTAGTTGTGGCGTGTTCGGAGGAAGGTGATTTCGAGTGTGTTTCTGCTCGTCTCCAGGCGTGTGTGTACGGCGTAGCGGCTGTCCTCTGGGCTACAGCCAAGTTTCATTTGTCTCCCGGACAAAAGCTGGCCATGCCCAGAAAGCTCAAGAGACTTCTGCTTGAGATGGCCAAACGGACTCCGATTGAAAGACCTTCTATTGAAATGGCGAAAAAGGCGTGCCGCGAGTACCTCTCCCGTCAGGGAACGAACGCCGAGAGCGTCTGGACGCAGATCATCAGCCGAGTTCACCAGGCATTGGATGGGAATAGAGATACAGAGGAATCATCTTCTCCTGAGTCTGAGCCACACTTGGGAGAAGTTCAGACAGgTTTCGTGCCGTTGGCCGGCGAGGGCCGTTTGGAGCCTGTAGCTGGTCCAGTTCCTCATCATTACCCAGAATCCTCCAGCAGCGTCAGACTGCTTTATAAAAGGCCTTCATCTGTCTATTTGACACACATTTCACTGACTTTTTCTGAATTGTTTTCGGTCAGAGGAGGCTCTGTTGAAGCAGATGAGCAGGACGAGAGCGGCGCTGAGGATGATGGGACGGTTTATTCATCATCATCCAGCCATAAGACTCCAGCGACTCCACAGAAAACCCATCAAGAAACAGACGGCCAGCCTCCCTTCCCTGCCTTGTCTTGTTCTAATGGGGCTCGCAACAACTTCCTGCTGCAGCAAGACCCGCTGACGGGAAGTCTGACCCTACTTCCTGTTCAGATCGCCGTgcttcagccaatcacaggccCGGATCACGCAGCTCCTGCTGACGCTGGGAATGAAAGCGTGTTTGTGAGCCGCAGAGACTGTCTGCAGAACATCATGGAGCTCCTCAGAGAACAGGGCGCCTCTGATGATAGTCATCAAGTCCAACATCTAGCTATgggtgAATACATCTTCTCTTTAGAAACGCTCCGGTTTGAGACCTTTTGTCGAGCGATAACGGAGAAGTTCAGGGCTCTGTTCTGGGACGAGAAGCTTCTGCGGGACCTGCACCGTCTGATCAATCAGGGTTCATGCCCACGcgtcTCTGATGATCAGTCCTCCTCAAAGGCAGTGGAAAGCGCCAGACAGCGTCCGTCCAGCGAGGAAAACACGGCTCTTGACCACAATGCAAACCTCTGGCCTTCGCAGCTGAACGAGATGAAGAAAGAAGAGGAACCGAACGAGTTTAAAGACGGAGCAGAGAAACAAAACACGGAGGAGACGCGCTGGAGACGGGAcccacaggaagtgacatcagaGGATGACAGCAAAGagctGATGGATCTGCTGGCTCCAGACGGTGGTGCTGCTGAAGCTCCTGACCGCTCGGAGCCGGACGCAGATGACTGTGACTCAGTGATGTCTGAGCGGACGCTCTCAGGCTGCAGCGGCCCTCGGCGGGCCCCGGGCCGCTCCTGGGCTCTGGCTCTGTACGGGGACGAGTGCTTCGGTCCGGACGTGCTGGAGTACACACAGAAGCTGAGCGGTCACAGCCAGACGCCCACGCTGGAGGACAAGTCACAGGACCCTCATTTCATAGAGCCTGAGTTTTTCCAGGAGCTTCACCAGCAGCTGATTATCGAGAGCAGAAATCTGAAAAAGACCAGCATGTTCTACCACAAGCTGATTCAGCAAGAGAGGAAAAATAAAGGTTCAGACACGAAGGCGATGGCGTCTAAAGTCAAGCTGCAGTTTGACGAACTCAGAGAAAAAGTGGAATTTCTGCAGTCTGTCCAGAAATATCTCCAGGTGTTGTCTGTGGATCAGTGGGGTTTAGCGCTCTCTCTGCTGCCCTCTCTGGCTGTGTGTGGAGCTGTGTCTCTGGAGCTGCAGCACTCGGACGATCCTGCTCTTCTGCACATTCTTTGTGAGCAGCGCCGGGGCAAAGGCTGCCCGCTAGTGACCGCCACAGCAAGAGGCTTCATGGCCTACCTGTACGCCAGGAATGCTCACATCGAGGGGTTTATTCGGCAGTTTTTCTACACGTACCGCTACTTCTGCACCCCAGAGGAGCTTCTGCAATTTCTCATGGACACATTCAACAGCACACTGGGAGCGGGTGAAGATCCCTCGTCAGACCGAGCTAAAGTCTATCAGCGCACTCTGGATTTATTACACTTCTGGATTGAAGACGCTCAGTTAGTGGACTTCAGCTCCAGCCTTCTGCAGACGCTCCACGCTTTCCTGACCACGCAGGTGTCTCCGGTGGACGGTCGAGGAGAGAGTTTGCTCTCGGCGCTGCAGAGCTCGCCCTGCAGGAGACACGTCTGTGACCCGTCGTGTGTGTTTGACCCCTCCATCAGCGACCGGAAGCTCTCCGTCAGCTCGCCCGCAGAAGATACTGCTCCAAAGGGTTTCCAGCCTCAGACGCTCCCGAGCAAAGACAAGGTCTTCTCCATCGCTGCGGCTCTTCCTCGGCCGTGTTACGCCTCTCTGATGagtctgagatcagacgagagaCGTCCCTTCAGTCAGAGCGAACACACAGCGCTGAGCATCGGCCAGCAGCTCACCTTACTGGAGCAGGAAATCTTTCAGGACTGTCATCCGGTTCACTTCCTGAACTCAAGAGCTCATGGAGTGACAGAAAACTCTGGAAACATATCCAGGTGTGTGTCTCCGCTCTCCTCGCCTCTAGAGGGCAGCGACGCGTCCGGGCCCCAGGGGCCCCTGCAGAGGCTCCTCACGCACGCAGACTGTGTCTCCAACTGGGTTTCTGCTGAAGTCGTGGTCTGTGACTCGGCCAAGGCCCAGGCGTCTTTGCTCGCCCGCTTTCTCGCCGTTGGCAAGTTCTGCTACGAGACGAGGAACTTCTCCACAGCCATGCAGATTCTGTCAGGCCTGGAGAACGTGATTGTGAGGCAATTACCGGCCTGGAAGCATCTCTCTCTGAAGGTGTGTGAGGTTCTGGAGGAGCTCAGGGCTGTGCAGGTGTTTCTGAAGAGTGACAGTCTGTGTCTGATGGAGGGAGAGAAGGGCAGAAGACGGCCGACTCTCCCAGACGCTCAGATCCTGGCCTTACACGTCCAGCAGCTGGAGATCGGAGCGTTTACCGTGACCAGCGGAGCCTACAAGTGGCCCAAACTCAGGAACATTGCGCGTGTGGTCAGTCAGGTCCACGCCTTTCAGGAGCGTCTCTATTCCTACCCTCCTGACCTTGAGCTGCAGTCGTATCTGCGTGGGAGAATCGCTCGCTCCGGCAGATGTGACATCCTGCTCCTCGCCTCCGACAACCACATCAACTTCAGCCAGACGCCCGCAGCTCGCCGGATCCACGACACGCTGCGCCGCGTCAAAGCGTCTTTCCAGTGACCAGAACAGATGTGCAACGAGCCAGAGCTGCAGTGACCGAGAGAGCGGCGCGCTGGaacttgaggaaaaaaaacagatagaaAAAAACCACCTGCACACTATGAAAACATCTTAATCTGTTTGACAGCACGCGTACTGCAAGTAAacactgcacaaacaaacaggcTGCAAATACACGCCACAGAAACAAATACTCACCACGCAAACAAATACTTCAGAAACAGAAACATGTTGAAAATactcacaaaacaaagaaatacaaacacgctgaaaaaacaaatactcaCAGCGCAAACAAACACcctcaaaaacagaaacacacggcaaatacatacaaaataaacaaatgcaaaaacagaaatgtgcaGAAAATCCAACACAAACACGCTGCAAATACTCACCACAGAACAAATACTCACCGcgcaaacaaatacaaacatgctgaaaatactcaatatacaaacaaatactcacaacacaaacaaatagactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141397 lncRNA downstream 28724 20847297 ~ 20926743 (-) True G95623
TU141307 lncRNA downstream 126414 20828778 ~ 20829053 (-) True G95549
TU141282 lncRNA downstream 277198 20621262 ~ 20678269 (-) False G95535
TU141283 lncRNA downstream 332237 20621262 ~ 20623230 (-) False G95535
TU141279 lncRNA downstream 332324 20621262 ~ 20623143 (-) True G95535
TU141425 lncRNA upstream 1327 20999040 ~ 20999265 (-) True G95641
TU141426 lncRNA upstream 3624 21001337 ~ 21001844 (-) True G95642
TU141427 lncRNA upstream 4914 21002627 ~ 21003651 (-) True G95643
TU141539 lncRNA upstream 489801 21487514 ~ 21495153 (-) True G95715
TU141779 lncRNA upstream 876800 21874513 ~ 21874929 (-) True G95899
XM_043256148.1 mRNA downstream 5769 20947987 ~ 20949698 (-) True vox
XM_043255989.1 mRNA downstream 8942 20944584 ~ 20946525 (-) True vent
XM_043255372.1 mRNA downstream 268547 20662202 ~ 20686920 (-) False blnk
XM_043255253.1 mRNA upstream 30052 21027765 ~ 21042154 (-) False LOC122356507
XM_043255251.1 mRNA upstream 39272 21036985 ~ 21042123 (-) True LOC122356507
XM_043255250.1 mRNA upstream 212105 21209818 ~ 21254638 (-) True LOC122356506
XM_043256061.1 mRNA upstream 271637 21269350 ~ 21323003 (-) False LOC122356942
XM_043256060.1 mRNA upstream 271637 21269350 ~ 21323001 (-) True LOC122356942
TU141260 other downstream 383905 20570038 ~ 20571562 (-) True G95526
TU141237 other downstream 458603 20493642 ~ 20496864 (-) True G95511
TU141235 other downstream 463391 20488785 ~ 20492076 (-) True G95510
TU141250 other downstream 468763 20479925 ~ 20486704 (-) True G95520
TU141433 other upstream 9759 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 416087 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 576538 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 655899 21653612 ~ 21653681 (-) True trnag-gcc_72
TU141816 other upstream 1140616 22138329 ~ 22143970 (-) False LOC122357128

Expression Profile