RNA id: XM_043254801.1


Basic Information

Item Value
RNA id XM_043254801.1
length 1889
RNA type mRNA
GC content 0.50
exon number 6
gene id fndc5a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18073731 ~ 18080606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagagagatgccaCAGGCTCACCGCACACTCCttcagtcagttttttttagcttcttagTGTTGCAGGTATGAAGACAGCCGTATGAAGAACCGCACAGACAAAAGGGGCTCGTTTCAGTGTCTCCGCTGTGCAGAGCGATGCGGGCGTGGAGCTGTCCCCGGTGCTGAACCGCCGCTGTCCGCGGTGCTGAAACACGGCGCTCCGGTCCCACAGCGACGTTCATCGACGTGAATGCTAGACCAGCGGAGGACATTCACATCAAGCCTGCGTGGAAAGGATGAGGAGGGTTTTCATGTCCACATCGCTGCTCATATTGAGCTGTTTCGGAGCGTCGTGGGTCTTGGCTGACAGTTTGGCTGCTCCGGTGAACGTGTCCATCAGAGATCTAAAGGGCAGCTCTGCTGTGGTGACATGGGACATCCCAGACGGGGAGCCAGTCATCGGCTTTGCCATCACGCAACAGAAAAAAGACGTTCGCATGCTGCGCTTCATCCAGGAAGTGAACACTACCACACGGAGCTGTGCATTGTGGGATCTGGAGGCAGATACGGACTACATAGTGCATGTCCAGTCCATCAGCGTAAGCGGGCCGAGTCCCCTCAGCGAACCTCTGCAGTTCAAAACCCCCAAAGAAGCCGAAACGCAGGCCTCTAAGAGCAAAGACGAAGTGACCATGGAAGAAGTGGGTCAGAACGCTCAGCTCCGGGCCGGGGAGATCATCATCATCGTGGTGGTTCTGATCATGTGGGCCGGTGTGATCGCTCTCTTCTGCCGTCAGTACGACATCATCAAAGACAACGAGCCCAACAATAACAAGGACAAAGCCAAGAACTCGTCCGAGTGCAGCACCCCGGAGCATCCGTCGGGAGGTCTGCTGCGCAGTAAGGTATAAGCGCTGCCCTGGGGGACAGACCACACTAGTTCTCagagaacaacaacaataaccGAACACCATCTGTGAACATTATCAATGCGTGACAGGATGGTTTCCGCCTCGCTGGATTCTGCTTTTTACCGCACGGATACGGAGCGGCCGCATGCGCTCATCCTCCAAACGGGAAGCAGGAATGCTGGAAGTTCCCTGAGAACAGCCGGAATAATCCTGCACCTGAAAGAGAAGCCAGAAAGATGATGTTTCGCACAGCTCTGGCTCCAGCGGTATGGAGACAAAACCGAATCTGTGGCTGTAAGCggcaggagaaagaaagaaataccgggggggaaaaaagaccCTTCTCACTTCTCCATCACTTTTCAGACAACTGGCGTCTGCAAGGAGATCTAAAACTCTCTCTTTTAACCTCGAAAACTCCCGTTTCTCTTTTACCCTTTTCAAACGGCATGATCCACATTCTTCTCAACGGCGGCGAAAGCTTTTATAACAAACCTGTAGCAAGCCACTACACGCAGGACAAACATTTCTAGCGGTCAAAAAAATTGCTCATTCCTATGTCGCGAAAAACAGTACGTCCGAACATTTAAATCAGCTTGGGTATGCAAGCATTAAGGGGACGTTCCTTTTTAGAATTTTGAGAACGCAGGAACGTTATTTTCGAATGTTCTCCGTTCTCTTGGATTTCAAATGTCTGAAACAACATTCGAAATCCGGGATTTAAAACACCAGTTAAAACACGAGGTTTGAGGGTTTTAAACAAAGGAAAGCTGTAAAGTAAATTCCCGCCCAATCCCTGCACGAATGAGACATTATTCGTGCGATTATGAAGCACACGGGGTCAGATCAGTTCCACTGAAGCTCAAGATCAGTGTTGCTTTTGTTAAGCAGAACTAAACTgttaaaagctgcatttaacGAAATAaagctggaataaaaaaaaaactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140056 lncRNA downstream 79482 17940403 ~ 17994249 (-) True G94663
TU140073 lncRNA downstream 102755 17970213 ~ 17970976 (-) True G94672
XR_006252304.1 lncRNA downstream 163015 17903197 ~ 17910716 (-) False LOC122356279
XR_006252303.1 lncRNA downstream 163015 17905852 ~ 17910716 (-) True LOC122356279
XR_006252405.1 lncRNA downstream 173616 17892037 ~ 17900115 (-) True LOC122356989
TU140117 lncRNA upstream 26824 18107430 ~ 18107801 (-) True G94709
TU140119 lncRNA upstream 27232 18107838 ~ 18108189 (-) True G94711
TU140122 lncRNA upstream 31084 18111690 ~ 18113621 (-) True G94713
TU140132 lncRNA upstream 39197 18119803 ~ 18120616 (-) True G94723
TU140138 lncRNA upstream 53839 18134445 ~ 18136614 (-) True G94728
XM_043255013.1 mRNA downstream 93622 17972876 ~ 17980109 (-) True rhd
XM_043255014.1 mRNA downstream 108861 17960037 ~ 17964870 (-) False rsrp1
XM_043255015.1 mRNA downstream 108861 17960959 ~ 17964870 (-) True rsrp1
XM_043255705.1 mRNA downstream 220358 17800984 ~ 17853373 (-) False runx3
XM_043256046.1 mRNA upstream 293262 18373868 ~ 18380023 (-) False LOC122356930
XM_043256045.1 mRNA upstream 293262 18373868 ~ 18379251 (-) True LOC122356930
XM_043256047.1 mRNA upstream 299429 18380035 ~ 18383710 (-) True ftr69
XM_043255034.1 mRNA upstream 377592 18458198 ~ 18504277 (-) False fgfr2
XM_043255032.1 mRNA upstream 377592 18458198 ~ 18504276 (-) False fgfr2
unassigned_transcript_1930 other downstream 354025 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 354552 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1625969 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1647196 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1781365 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 464975 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 464975 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 464975 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 1787407 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 2062990 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile