RNA id: XM_043254868.1


Basic Information

Item Value
RNA id XM_043254868.1
length 2442
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC122356317
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23157102 ~ 23167091 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATCAGCATAAAACCTCATCACGCGACCTGGGCTAGTCACTGCAGCATAAACACCTCCAGCGTTCAACGCAGACAAGATTCAAAACACGACCCCAGCGGTTCGAGAGAAGCGTTTGCTCGAGTCACGATGCTTCTCACGCTGCTTTTAGTCTCTACGGCCGTGGCAAGTCCTCTGTTGGGTACAGAGCAGTGTGCCCGCGGTCCCCCCTACTGGTGCCAGAATGCCAAGACTGCTTCCCTTTGTGGTGCCGTCCAACACTGCCAACAGAACGTGTGGAACAAGCCTCAGATGAAATCTGTGCCATGTGATCTGTGCAAAGAGGTGTTGATGGTGGTGGAGCAGCTTTTGAAGGACAACGCCACTGAGGGCGAAATCCTCGGATACATGGAGAAGGCCTGTCAGCTGATCCCTGACGAGAGCTTGGCTGACCAGTGTAAGGAGATTGTTGACAACTACTTCCCCATTCTGATGGGCATCCTTGAAGGAGAGCTGGATGACCCCGGTGTGGTTTGTGGTGCTATGGGCCTGTGTGTGTCCCAGCAGGTAGCTCTGGCTGAAGCTCAGCTCATGTCCAATGAGATCCCTAAGGTGGACCTGAGCCAGCATGTTAGCCCCTTCCTGCTCAACATCCCTCAGCTGCTCTTCCCTCAAGAGAACACCAAGAAAGAGACCCCCAAACAGACCGGCGGCGACGTGTGCCAGGACTGTGTTACCTTCATTTCTGACACTCAGGAGGAAGCCAAAGCCAATTCATCATTTATCAATGATCTACTTGCACACGTCGAGAGCCAGTGTGAGCTTCTGGGACCTGGCATGTCTGATATGtgcaAGGAGTATATCAGCCAGTATGGGCCATTGGTCTTTCAACAGCTTATGTCTATGGAGCAGCAACCCAAGGATATCTGCTTTCGTGCTGGATTCTGCTCCTCAAAGACCAAATCTGTGCGCATGGAGAAGCTGATGCCTGCCAAATCGATCCCTGCTGTCAAGATGTTCCCTGCAACCAAACTTGAAACCCCTGTCAAAAGCGAGCCTGCTAAGAATCTGGTGAAAGTGCGTGACTCTCCTCAGTGTGCCATCTGTGAGTTTGTGATGAAGGAAATTGAGGACAAGCTGGAGGATCAGACGTCTGAGGAAGAGATTGTGCAGGCTGTGGAGAAAGTCTGCGACATTTTACCCTCCACACTCACTGCTCAGTGCAAGGACCTGATTGAGACCTACGGACAGGCCATCATTGATCTGCTCGTGCAGGAGGCCGATCCCAAAACCATCTGCTCTTTCCTCGCTCTCTGCAATGGGGTCAGCCATGTCTcTGTAATGGACAAGCAACGATTTGAGGCGGGTGGCTTCTGTGACGTGTGTAAGATGGCCGTGCGTTATGTGGACGGGCTCCTGGAGCAGAACGCAACTCAGTCTGAGATCGAGGAGGCCGTGCTGAAGGTCTGCAACTTCTTGCCTGATGCTGTCAGAGATGAGTGTAACCAGCTCATTGAGCAGTATGAGCCCCTGCTGGTGCAACTGCTGCTCCAGACGCTCGACCCAGACTTTGTCTGCATGAAGCTAGGAGCATGTCCAGAGGCAGTGCAGAAGCTGCTGGGATTGGAGCAGTGCAGCTGGGGACCAGCATACTGGTGTAAGAACGTGGAGACCGCTTCTCGCTGTAACGCCTTGGATCACTGCAGGCGTCACGTGTGGAGCTAAAGGATGAGCAGAGCGTTCCCCAACAATCTTAAGGAACTAAAAGAGAATTGCTGTAGAGCTGCTTTTCTGTCTTGAAATCAATATTTGGGTTTTCTTTTACAAAGTGACACTTGGAATTGAACTGTCACAGCTAATTTAACAGCCTTGTTTCAAGGGTATGAAAGTTTTTACTGCAATGATGTTTTGAGAGGGCAGGGATTTGGAGGGAGATATGAATGGCAGGTGTAGATATTTGGGAAATACTTGCACTGAAACTTCTTTTTGCGCTATTTTGAAGGTGTAATCTTCTTAGTTTAAAAGTAATCATCTTTTTAGTTGTACAATGTTGGTTTCTTCAAATATGCACAGAGCATGAGTTTATATGGAAATAGATTGTGCCTTTTATCAGAAGAGGGGGGTCTGAGACCCCTgagaatgaaaaatgttttggatgCTCTAATATCCCTGCCTCCCTCTTTAACTGCAAATGCACCTGCAAGGCCAGTGATtttaaaccttttgtttttaatgggtgACACTTTTGGTCCTAAAGGAAGTTAGTGTTGTCTAACTGTCATTGTGTCTAATGATCTGAAGTGATGTCGACATTCTTCATTTGATCCCACTAACTGATGCTTGTCACTGATTGATCTGTCACTGCTACCTAAATGTCAGATTATCCTTGTGCTTCACACTGTTTGGACTGagccgttttgtttttttttttttaattaaattgaaataaaaccaaCTTCAACCC

Function

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0005764 lysosome cellular_component

KEGG:

id description
K12382 PSAP, SGP1; saposin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142099 lncRNA downstream 2607 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 2607 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 127202 23017198 ~ 23029900 (-) True G96061
TU142018 lncRNA downstream 149639 23006279 ~ 23007463 (-) True G96060
TU142011 lncRNA downstream 162533 22994152 ~ 22994569 (-) False G96053
TU142128 lncRNA upstream 9711 23176802 ~ 23178096 (-) True G96117
TU142211 lncRNA upstream 272186 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142295 lncRNA upstream 371687 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 760240 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 875437 24042528 ~ 24067735 (-) True G96279
XM_043254876.1 mRNA downstream 20460 23134818 ~ 23136642 (-) True c1d
XM_043254796.1 mRNA downstream 337645 22802718 ~ 22819457 (-) True LOC122356266
XM_043254794.1 mRNA downstream 667779 22485289 ~ 22489323 (-) True LOC122356263
XM_043254793.1 mRNA downstream 709091 22435248 ~ 22448011 (-) False LOC122356262
XM_043254651.1 mRNA downstream 827810 22326705 ~ 22329292 (-) True ypel5
XM_043254878.1 mRNA upstream 782 23167873 ~ 23168903 (-) False mrps6
XM_043254877.1 mRNA upstream 782 23167873 ~ 23168902 (-) True mrps6
XM_043254695.1 mRNA upstream 16824 23183915 ~ 23238517 (-) False micu1
XM_043254694.1 mRNA upstream 16824 23183915 ~ 23238517 (-) False micu1
XM_043254693.1 mRNA upstream 16824 23183915 ~ 23238517 (-) False micu1
TU142010 other downstream 161503 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 333843 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 334588 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 713816 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 1103223 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 1175770 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 1232032 24399123 ~ 24403644 (-) False fgf8a

Expression Profile