RNA id: XM_043255015.1


Basic Information

Item Value
RNA id XM_043255015.1
length 2100
RNA type mRNA
GC content 0.45
exon number 5
gene id rsrp1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17960037 ~ 17964870 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAGTTTCGGttaagaagaaaaacaagccGCGCGCGAGACGCTTCACGCTCGCGAGAAAACTACGGTGTTTGCTACAGATAGCCGCTGACTACTCGGAATCGCGTTTTTCGTTTCAAGCATTCGGACGTGTTTTTGCAATAAACGCACGTTTATTTCACAGCTGTTGAGTTTCGAAACGTTTCTGTTTTGAACTCGCTCGAGGAGGGTCGAGCGATACAGAGGTTTGTTCGAAATCGCTCATCTTACTGTTGTATCAAGTCTCTTTTGACGGTTTGATCATGAAGGAGGCCAACCCTGGGCATCGCAGTGAGGGCATGAGGCTCATCTTTGATCAGAAGGCTCCATCCGGTCGCAGCTCCTCTcgctccagcagcagcagcagcgacAGCTCGTACTCCAGCAGCAGGGGGAGCCGCTTTTCCCGCAGGTCACGGAGCGTTTCACGGAGCTCATCTTCTGACAGCGGCTCTTCCTCACCCGCACGCTCTCGCTCACGTTCCCGCTCTCATCCACGCTGCTCGGGCCGCTTACACTGCCGTCACAGACGCGATTCTCCTCCTCGCCGTTACCGGGCTCGCTCTCGCTCTTACAGCCCTTCTCCTGAGCGTTCCTCCCACCGCAGACGCTACCATCGTCGCAGTCGCTCTCCATCGCCCTATAGCTACTCCAGGCGTTACAGGCGTTCTCCGTCGCGGCCTCGCTCTCGCAGTCGTTCCCCGGTTTGCTGGAGGGGAAGCAGGTTCGTGGGGAGGTACAGGTGCCGTTTCTCCCGCTCACCCAGGTCCTCCACAGATTACAGAAGCCGGTCTCGCAGCCGTGAACGCTCTGCAGTCTGCCTCAGCCTTGAGGAGAAGAAGTATCTGTTAAATGTGGCCAAAGCAAATGCCACCAGGATTCTGGGAGTGCAGAACTTAGAGCTGCCAGCTAGCCTGAAGGacctggaggaggaggaggaggagaggagatcTTCATCAGATAAAGAGGAAAGGGTGAGCGCTGACCGGGCATCACAGAAGACACCAGCACAGACGGGAATGATTTTACCTGATGGATTTAATGGAATGATGAACAGCACTTGTCCGGAATAGAGCTGAAATTCCTCCGCCCTTTGGacaaagagggagagagggggaAGTCACATGACTTGAATGACACCAGCTTTAAGTCTTATGTGCACAACTTCAAAGGTTAAGTAATTGTGTACGATGTCAGCGGTGGCACTGTGTCGAACAGAAACTGACCAAATGCATTTGTGTGACTCACTTCACACTTAACACTTTCGGCCACAACACTGCACATATGTGGAAAGGATTGGGGTcagtagaatttattttttattcataaaaaggacttttgaattgatcaaaagtcacagtaaagCCATTTATactgttgaaaataaatgctattctttaaACTCTCTATTCAAATAATCCTAAGAAAGGTATAatgattttcacaaaaatatgaagcaccAAACTGTTCAATACTGATgagttttgagaaatgtttttggaacaccaaattagcatatgagaatgatttctgaaggatcatgtgatactgaagtagctgctgaaagctgaaaattcagctttgcatcacaggaataaacataaaaattgtcTTTAAGTAGAAAAGGgttatttcaaattgtttttgcagcattttagatcaaataaatgcagccttattgAGTATGAGccttaaaaactataaaaaaaaaattaaatcatactGATCCCAAACTCTTGAATGATAGTGTATCATTACAGCTGTTAGAACTACAGGAAATGATTTATGTTTGCTGATAGTTAAACTGGGTTGCGTTGTCATTTACCAGAGTTTTCTTCTGTTCATCACGTGTGAAGACCAGAGAGCTCACTCTACAGTGATGGATggggtttggaaaaaatactgtcttattaattattactattattatttatttagtttatttatttttggggggCTTTGTTCATGCATCAAAAATCTTGTTGTTTTTGGTCCATTTCAGAGCCGTTTAATATGAAAGATTACTTCTgccacataattaaaaaaataaaataaatgcatgtaattctGAGATTCTTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252304.1 lncRNA downstream 50243 17903197 ~ 17910716 (-) False LOC122356279
XR_006252303.1 lncRNA downstream 50243 17905852 ~ 17910716 (-) True LOC122356279
XR_006252405.1 lncRNA downstream 60844 17892037 ~ 17900115 (-) True LOC122356989
TU140004 lncRNA downstream 169069 17790884 ~ 17791890 (-) True G94619
TU139990 lncRNA downstream 238659 17721728 ~ 17722300 (-) True G94608
TU140073 lncRNA upstream 5343 17970213 ~ 17970976 (-) True G94672
TU140117 lncRNA upstream 142560 18107430 ~ 18107801 (-) True G94709
TU140119 lncRNA upstream 142968 18107838 ~ 18108189 (-) True G94711
TU140122 lncRNA upstream 146820 18111690 ~ 18113621 (-) True G94713
TU140132 lncRNA upstream 154933 18119803 ~ 18120616 (-) True G94723
XM_043255705.1 mRNA downstream 107586 17800984 ~ 17853373 (-) False runx3
XM_043255706.1 mRNA downstream 107773 17800984 ~ 17853186 (-) True runx3
XM_043255644.1 mRNA downstream 172828 17776719 ~ 17788131 (-) True chp1
XM_043255629.1 mRNA downstream 187108 17769381 ~ 17773851 (-) True khdrbs1a
XM_043255024.1 mRNA downstream 195699 17752801 ~ 17765260 (-) True LOC122356377
XM_043255013.1 mRNA upstream 8006 17972876 ~ 17980109 (-) True rhd
XM_043254799.1 mRNA upstream 108861 18073731 ~ 18080606 (-) False fndc5a
XM_043254801.1 mRNA upstream 108861 18073731 ~ 18080606 (-) False fndc5a
XM_043254800.1 mRNA upstream 108861 18073731 ~ 18080606 (-) True fndc5a
XM_043256046.1 mRNA upstream 408998 18373868 ~ 18380023 (-) False LOC122356930
unassigned_transcript_1930 other downstream 241253 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 241780 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1513197 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1534424 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1668593 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 580711 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 580711 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 580711 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 1903143 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 2178726 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile